miRNA display CGI

Results 1 - 10 of 10 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
3297	3'	-63	NC_001545.1	+	991	0.66	0.08609
	Target:  5'- uCGCCgagUGGGCCgGUGGCGgugguUCAgccUCCCCc- -3' miRNA:   3'- -GCGG---GCCCGG-UACCGC-----AGU---AGGGGcu -5'
3297	3'	-63	NC_001545.1	+	3983	0.66	0.078228
	Target:  5'- aCGCCUGGGCCAgccccucgUcggucgcggcacaGGUGcCAccgCCCCGAg -3' miRNA:   3'- -GCGGGCCCGGU--------A-------------CCGCaGUa--GGGGCU- -5'
3297	3'	-63	NC_001545.1	+	7544	0.66	0.073754
	Target:  5'- gCGCaaGGuGCCGccaugaUGGcCGUCGUgCCCGAg -3' miRNA:   3'- -GCGggCC-CGGU------ACC-GCAGUAgGGGCU- -5'
3297	3'	-63	NC_001545.1	+	1562	0.67	0.060802
	Target:  5'- gCGCCCGccGGCCAgccggaugacgaGGCGcUCAUCCCg-- -3' miRNA:   3'- -GCGGGC--CCGGUa-----------CCGC-AGUAGGGgcu -5'
3297	3'	-63	NC_001545.1	+	3133	0.68	0.050696
	Target:  5'- gGCUCGGGCgc-GGUGgCAUCCCCa- -3' miRNA:   3'- gCGGGCCCGguaCCGCaGUAGGGGcu -5'
3297	3'	-63	NC_001545.1	+	4429	0.7	0.039397
	Target:  5'- gCGCUCGcGCCAcacuUGGCG-CuUCCCCGAc -3' miRNA:   3'- -GCGGGCcCGGU----ACCGCaGuAGGGGCU- -5'
3297	3'	-63	NC_001545.1	+	8943	0.7	0.034712
	Target:  5'- gGCCCaaucgGGGCCGUGGCaauUCGggcUCCCGAg -3' miRNA:   3'- gCGGG-----CCCGGUACCGc--AGUa--GGGGCU- -5'
3297	3'	-63	NC_001545.1	+	1871	0.7	0.033629
	Target:  5'- gCGCCgGcGGCgaaGUGGCGuUCAgggCCCCGGa -3' miRNA:   3'- -GCGGgC-CCGg--UACCGC-AGUa--GGGGCU- -5'
3297	3'	-63	NC_001545.1	+	3214	0.7	0.032579
	Target:  5'- gCGCCaccagcuGGGCCAU-GCG-CAUUCCCGAg -3' miRNA:   3'- -GCGGg------CCCGGUAcCGCaGUAGGGGCU- -5'
3297	3'	-63	NC_001545.1	+	4037	1.08	1.5e-05
	Target:  5'- cCGCCCGGGCCAUGGCGUCAUCCCCGAg -3' miRNA:   3'- -GCGGGCCCGGUACCGCAGUAGGGGCU- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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