Results 1 - 8 of 8 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 3298 | 3' | -57.4 | NC_001545.1 | + | 8419 | 0.66 | 0.173134 |
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Target: 5'- -aUCAGUGGGGAUCUCgCaaaUGcaGGCUCCa -3' miRNA: 3'- acGGUCGCCCUUGGAG-Ga--AC--UCGAGG- -5' |
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| 3298 | 3' | -57.4 | NC_001545.1 | + | 3857 | 0.66 | 0.167893 |
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Target: 5'- gGCCGGUGGGGuuGCCccCCUcgGGGCg-- -3' miRNA: 3'- aCGGUCGCCCU--UGGa-GGAa-CUCGagg -5' |
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| 3298 | 3' | -57.4 | NC_001545.1 | + | 6703 | 0.66 | 0.162794 |
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Target: 5'- gGCCAGCGcaGGGACUggUCCa-GGGCcCCg -3' miRNA: 3'- aCGGUCGC--CCUUGG--AGGaaCUCGaGG- -5' |
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| 3298 | 3' | -57.4 | NC_001545.1 | + | 6692 | 0.67 | 0.143768 |
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Target: 5'- cGgCGGCGGGGcCCUCCg-GAGUcacggCCg -3' miRNA: 3'- aCgGUCGCCCUuGGAGGaaCUCGa----GG- -5' |
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| 3298 | 3' | -57.4 | NC_001545.1 | + | 6009 | 0.67 | 0.13934 |
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Target: 5'- aGCCcaccucGGCGGGggUC-CaCUUGAGUgCCg -3' miRNA: 3'- aCGG------UCGCCCuuGGaG-GAACUCGaGG- -5' |
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| 3298 | 3' | -57.4 | NC_001545.1 | + | 5460 | 0.68 | 0.111693 |
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Target: 5'- cGCuCAG-GGGAaaGCCggCCUUGAGaUCCg -3' miRNA: 3'- aCG-GUCgCCCU--UGGa-GGAACUCgAGG- -5' |
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| 3298 | 3' | -57.4 | NC_001545.1 | + | 3349 | 0.72 | 0.054747 |
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Target: 5'- aUGCCucGCGGGGgccugACCUCCgcGGGCUUg -3' miRNA: 3'- -ACGGu-CGCCCU-----UGGAGGaaCUCGAGg -5' |
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| 3298 | 3' | -57.4 | NC_001545.1 | + | 4862 | 1.12 | 2.2e-05 |
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Target: 5'- aUGCCAGCGGGAACCUCCUUGAGCUCCg -3' miRNA: 3'- -ACGGUCGCCCUUGGAGGAACUCGAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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