miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3298 5' -59.1 NC_001545.1 + 7718 0.66 0.152994
Target:  5'- -aGGCGUCGGGGucGCGgGCggcGGUCg -3'
miRNA:   3'- ggCCGCAGCUCCu-UGCgCGac-UCGGg -5'
3298 5' -59.1 NC_001545.1 + 8519 0.66 0.152994
Target:  5'- -aGGCGUUGAcagcccagaaGGugcacGCGCGCUGuguGCCa -3'
miRNA:   3'- ggCCGCAGCU----------CCu----UGCGCGACu--CGGg -5'
3298 5' -59.1 NC_001545.1 + 3549 0.67 0.139743
Target:  5'- -aGGCGcCGcAGGcGCGCGC--AGCCUg -3'
miRNA:   3'- ggCCGCaGC-UCCuUGCGCGacUCGGG- -5'
3298 5' -59.1 NC_001545.1 + 3035 0.67 0.127552
Target:  5'- cUCGGuCGgagGAGGAcugACGCGCcuggcagcGAGCCCc -3'
miRNA:   3'- -GGCC-GCag-CUCCU---UGCGCGa-------CUCGGG- -5'
3298 5' -59.1 NC_001545.1 + 3797 0.67 0.127552
Target:  5'- -gGGCGuagugcUCGAGGuGCGUGCgc-GCCCc -3'
miRNA:   3'- ggCCGC------AGCUCCuUGCGCGacuCGGG- -5'
3298 5' -59.1 NC_001545.1 + 2884 0.67 0.123712
Target:  5'- gCCGcGC-UCGcGGcuACGCGCaccGAGCCCg -3'
miRNA:   3'- -GGC-CGcAGCuCCu-UGCGCGa--CUCGGG- -5'
3298 5' -59.1 NC_001545.1 + 1869 0.68 0.116351
Target:  5'- gCCGGCGgCGAa-GugGCGUUcaGGGCCCc -3'
miRNA:   3'- -GGCCGCaGCUccUugCGCGA--CUCGGG- -5'
3298 5' -59.1 NC_001545.1 + 1710 0.68 0.115994
Target:  5'- gCCGGCGgggCGGGcGcggccgccguaucGGCGCGCgcgcggaGAGCCUc -3'
miRNA:   3'- -GGCCGCa--GCUC-C-------------UUGCGCGa------CUCGGG- -5'
3298 5' -59.1 NC_001545.1 + 3274 0.68 0.106402
Target:  5'- uCCGGCccguagacaaccaccUCG-GGAAUGCGCauGGCCCa -3'
miRNA:   3'- -GGCCGc--------------AGCuCCUUGCGCGacUCGGG- -5'
3298 5' -59.1 NC_001545.1 + 2803 0.68 0.102841
Target:  5'- gCCGcGCGUCGGuGGGCGUGUgucgcGuGCCCc -3'
miRNA:   3'- -GGC-CGCAGCUcCUUGCGCGa----CuCGGG- -5'
3298 5' -59.1 NC_001545.1 + 2018 0.69 0.093693
Target:  5'- gCUGGC-UCGccGAGCaaGCGCUGcGCCCa -3'
miRNA:   3'- -GGCCGcAGCucCUUG--CGCGACuCGGG- -5'
3298 5' -59.1 NC_001545.1 + 3229 0.69 0.093693
Target:  5'- gUGGCGcCGcGGu-CGCGCUcGAGCCa -3'
miRNA:   3'- gGCCGCaGCuCCuuGCGCGA-CUCGGg -5'
3298 5' -59.1 NC_001545.1 + 326 0.69 0.093693
Target:  5'- cCCGGgccugcucCG-CGAGGucgcuCGCGUUGAGCgCCg -3'
miRNA:   3'- -GGCC--------GCaGCUCCuu---GCGCGACUCG-GG- -5'
3298 5' -59.1 NC_001545.1 + 6316 0.69 0.089972
Target:  5'- aUCGGCGcgcUCGAGGAgauucagacccccuACGCGCgc-GCCa -3'
miRNA:   3'- -GGCCGC---AGCUCCU--------------UGCGCGacuCGGg -5'
3298 5' -59.1 NC_001545.1 + 4009 0.69 0.088028
Target:  5'- gCGGCGcaccUCGAGGucgucguaguACGC-CUGGGCCa -3'
miRNA:   3'- gGCCGC----AGCUCCu---------UGCGcGACUCGGg -5'
3298 5' -59.1 NC_001545.1 + 7770 0.7 0.080138
Target:  5'- gCCGGCGcagugCGGGGGugGCGgCggucgugGAGUUCg -3'
miRNA:   3'- -GGCCGCa----GCUCCUugCGC-Ga------CUCGGG- -5'
3298 5' -59.1 NC_001545.1 + 4761 0.7 0.077661
Target:  5'- aCGaGC-UCGAGGAcggcucacuGCGCGCUGcggGGCUCa -3'
miRNA:   3'- gGC-CGcAGCUCCU---------UGCGCGAC---UCGGG- -5'
3298 5' -59.1 NC_001545.1 + 8664 0.7 0.067824
Target:  5'- aCGGUGUCGgugGGGAagccccagcaggccGCGuCGCUGuGUCCg -3'
miRNA:   3'- gGCCGCAGC---UCCU--------------UGC-GCGACuCGGG- -5'
3298 5' -59.1 NC_001545.1 + 6597 0.71 0.06634
Target:  5'- gCCGGCGgCGAGuuccGCGCGCaGGGCgCg -3'
miRNA:   3'- -GGCCGCaGCUCcu--UGCGCGaCUCGgG- -5'
3298 5' -59.1 NC_001545.1 + 7192 0.71 0.062272
Target:  5'- uCC-GCGUCGGcGGcACGCGCUG-GCaCCg -3'
miRNA:   3'- -GGcCGCAGCU-CCuUGCGCGACuCG-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.