miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3299 3' -56.7 NC_001545.1 + 3573 0.66 0.196005
Target:  5'- aCUUGGGGca-CCCGGCaCUcguguaggcgccgcaGGCGCGCGc -3'
miRNA:   3'- -GGACCUUuuaGGGCCG-GG---------------UCGCGUGC- -5'
3299 3' -56.7 NC_001545.1 + 6597 0.66 0.187907
Target:  5'- gCCggcGGcGAGUUCCGcGCgCAGgGCGCGg -3'
miRNA:   3'- -GGa--CCuUUUAGGGC-CGgGUCgCGUGC- -5'
3299 3' -56.7 NC_001545.1 + 7416 0.67 0.161351
Target:  5'- gCUGGAg---CCCGGC---GCGCGCGg -3'
miRNA:   3'- gGACCUuuuaGGGCCGgguCGCGUGC- -5'
3299 3' -56.7 NC_001545.1 + 4442 0.67 0.156462
Target:  5'- aCUUGGcgcuUCCCcgacugcugggcGGCCCGccuGCGCGCGg -3'
miRNA:   3'- -GGACCuuuuAGGG------------CCGGGU---CGCGUGC- -5'
3299 3' -56.7 NC_001545.1 + 6736 0.67 0.156462
Target:  5'- cCCUGGAccAGUCCCuGCgCUGGC-CACGg -3'
miRNA:   3'- -GGACCUu-UUAGGGcCG-GGUCGcGUGC- -5'
3299 3' -56.7 NC_001545.1 + 3052 0.68 0.147085
Target:  5'- aCCcGGGccga-CCGGCUCAGCGCAgCGc -3'
miRNA:   3'- -GGaCCUuuuagGGCCGGGUCGCGU-GC- -5'
3299 3' -56.7 NC_001545.1 + 8432 0.71 0.085961
Target:  5'- gCCUGGGua--CCCGcaGCCCcuuGCGCGCGc -3'
miRNA:   3'- -GGACCUuuuaGGGC--CGGGu--CGCGUGC- -5'
3299 3' -56.7 NC_001545.1 + 6098 0.71 0.085961
Target:  5'- -aUGGAAGAggCCGGCCgCGGUGC-CGa -3'
miRNA:   3'- ggACCUUUUagGGCCGG-GUCGCGuGC- -5'
3299 3' -56.7 NC_001545.1 + 1904 0.74 0.051159
Target:  5'- gCCUGGAGcc-CCCGcGCCUGcGCGCACa -3'
miRNA:   3'- -GGACCUUuuaGGGC-CGGGU-CGCGUGc -5'
3299 3' -56.7 NC_001545.1 + 6542 0.77 0.026468
Target:  5'- cCCUcGAGgcacAAUCCCGcGCCCuGCGCGCGg -3'
miRNA:   3'- -GGAcCUU----UUAGGGC-CGGGuCGCGUGC- -5'
3299 3' -56.7 NC_001545.1 + 5935 1.1 5.4e-05
Target:  5'- cCCUGGAAAAUCCCGGCCCAGCGCACGc -3'
miRNA:   3'- -GGACCUUUUAGGGCCGGGUCGCGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.