miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3299 5' -55.4 NC_001545.1 + 6731 0.66 0.217838
Target:  5'- gACCAgucccUGCGC-UGGCCAcggccccgguUGC-CGcGGCg -3'
miRNA:   3'- -UGGU-----ACGCGuACCGGU----------ACGuGUaCCG- -5'
3299 5' -55.4 NC_001545.1 + 2911 0.66 0.198628
Target:  5'- cCCGUcgaGCGCGUGaGCC-UGCACAUcuGCc -3'
miRNA:   3'- uGGUA---CGCGUAC-CGGuACGUGUAc-CG- -5'
3299 5' -55.4 NC_001545.1 + 2088 0.66 0.192561
Target:  5'- gGCCAgcgUGCGCAaaGCCAgUGCGaucagcuGUGGCa -3'
miRNA:   3'- -UGGU---ACGCGUacCGGU-ACGUg------UACCG- -5'
3299 5' -55.4 NC_001545.1 + 7215 0.67 0.180912
Target:  5'- cACCGacugcUGCGCAU-GCCAgUGCGCGgccucgacGGCg -3'
miRNA:   3'- -UGGU-----ACGCGUAcCGGU-ACGUGUa-------CCG- -5'
3299 5' -55.4 NC_001545.1 + 7860 0.67 0.175325
Target:  5'- cACCGggugucaGCGcCGUGGCgCAgGCGCAUcGGCc -3'
miRNA:   3'- -UGGUa------CGC-GUACCG-GUaCGUGUA-CCG- -5'
3299 5' -55.4 NC_001545.1 + 3503 0.67 0.169892
Target:  5'- cGCCAacguUGCGCA-GGCUgcGCGCGccugcGGCg -3'
miRNA:   3'- -UGGU----ACGCGUaCCGGuaCGUGUa----CCG- -5'
3299 5' -55.4 NC_001545.1 + 6691 0.67 0.159476
Target:  5'- aACCGggGC-CGUGGCCA-GCGCAgggacUGGUc -3'
miRNA:   3'- -UGGUa-CGcGUACCGGUaCGUGU-----ACCG- -5'
3299 5' -55.4 NC_001545.1 + 2258 0.68 0.144931
Target:  5'- uGCCGuUGCGauc-GCCGUGCGCGgcgcGGCg -3'
miRNA:   3'- -UGGU-ACGCguacCGGUACGUGUa---CCG- -5'
3299 5' -55.4 NC_001545.1 + 7411 0.68 0.140359
Target:  5'- aGCCcgGCGCGcgcgGuGCCAacgGCGacCGUGGCg -3'
miRNA:   3'- -UGGuaCGCGUa---C-CGGUa--CGU--GUACCG- -5'
3299 5' -55.4 NC_001545.1 + 2157 0.69 0.123362
Target:  5'- cGCCGUGCGCGcUGGCCcccGC-CAguccgcGGCc -3'
miRNA:   3'- -UGGUACGCGU-ACCGGua-CGuGUa-----CCG- -5'
3299 5' -55.4 NC_001545.1 + 9024 0.69 0.123362
Target:  5'- gACCAgGCGCA--GCCGgggGCGCucUGGCg -3'
miRNA:   3'- -UGGUaCGCGUacCGGUa--CGUGu-ACCG- -5'
3299 5' -55.4 NC_001545.1 + 974 0.69 0.115599
Target:  5'- cCCGcGCGCuggguuggaGGCUgcGCACGUGGCg -3'
miRNA:   3'- uGGUaCGCGua-------CCGGuaCGUGUACCG- -5'
3299 5' -55.4 NC_001545.1 + 3207 0.71 0.088896
Target:  5'- gACCGcgGCGCcaccagcugGGCCAUGCGCAuucccgaggUGGUu -3'
miRNA:   3'- -UGGUa-CGCGua-------CCGGUACGUGU---------ACCG- -5'
3299 5' -55.4 NC_001545.1 + 4621 0.72 0.0753
Target:  5'- cACCGUGCGCGaGGCCcaggguAUGaGCGUcGGCa -3'
miRNA:   3'- -UGGUACGCGUaCCGG------UACgUGUA-CCG- -5'
3299 5' -55.4 NC_001545.1 + 6891 0.74 0.050337
Target:  5'- aGCCGUgGCGCGUGGCC-UGCGCcc-GCc -3'
miRNA:   3'- -UGGUA-CGCGUACCGGuACGUGuacCG- -5'
3299 5' -55.4 NC_001545.1 + 1191 0.75 0.037103
Target:  5'- cGCUGUGCGCAUacguaGCCuuccGCGCGUGGCa -3'
miRNA:   3'- -UGGUACGCGUAc----CGGua--CGUGUACCG- -5'
3299 5' -55.4 NC_001545.1 + 3260 0.83 0.009088
Target:  5'- aACCAccucgggaaUGCGCAUGGCCcaGCugGUGGCg -3'
miRNA:   3'- -UGGU---------ACGCGUACCGGuaCGugUACCG- -5'
3299 5' -55.4 NC_001545.1 + 5865 1.04 0.000153
Target:  5'- gGCCAUGUGCAUGGCCAUGCGCAUGGUc -3'
miRNA:   3'- -UGGUACGCGUACCGGUACGUGUACCG- -5'
3299 5' -55.4 NC_001545.1 + 5900 1.11 4.4e-05
Target:  5'- gACCAUGCGCAUGGCCAUGCACAUGGCc -3'
miRNA:   3'- -UGGUACGCGUACCGGUACGUGUACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.