miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3300 5' -57.8 NC_001545.1 + 7379 0.66 0.156905
Target:  5'- cGUUGGCaCCGCGCgcgCCGGGCucc-AGCCc -3'
miRNA:   3'- -UAGCCG-GGCGUG---GGUCUGuucuUCGG- -5'
3300 5' -57.8 NC_001545.1 + 6843 0.66 0.152105
Target:  5'- cUCuGcCCCGCGCCCcGAgcuGggGCCa -3'
miRNA:   3'- uAGcC-GGGCGUGGGuCUguuCuuCGG- -5'
3300 5' -57.8 NC_001545.1 + 6628 0.66 0.14698
Target:  5'- -gCGGCggCCGCGgCCGGcgcgacuGCGAGgcGCCg -3'
miRNA:   3'- uaGCCG--GGCGUgGGUC-------UGUUCuuCGG- -5'
3300 5' -57.8 NC_001545.1 + 2017 0.66 0.141568
Target:  5'- -cUGGCUCGCcgagcaagcgcugcGCCCAGGCGc--AGCCg -3'
miRNA:   3'- uaGCCGGGCG--------------UGGGUCUGUucuUCGG- -5'
3300 5' -57.8 NC_001545.1 + 1685 0.67 0.130054
Target:  5'- uAUCGGCgCGCGCgCGGA----GAGCCu -3'
miRNA:   3'- -UAGCCGgGCGUGgGUCUguucUUCGG- -5'
3300 5' -57.8 NC_001545.1 + 2305 0.67 0.12209
Target:  5'- -gCGGgUCGCGCgCAGGCGcgGGggGCg -3'
miRNA:   3'- uaGCCgGGCGUGgGUCUGU--UCuuCGg -5'
3300 5' -57.8 NC_001545.1 + 3571 0.67 0.11458
Target:  5'- -aCGG-CCGCGCCCuGAgc-GAAGCCc -3'
miRNA:   3'- uaGCCgGGCGUGGGuCUguuCUUCGG- -5'
3300 5' -57.8 NC_001545.1 + 835 0.68 0.110989
Target:  5'- --gGGCCCGCACCgGua-GAGgcGCCc -3'
miRNA:   3'- uagCCGGGCGUGGgUcugUUCuuCGG- -5'
3300 5' -57.8 NC_001545.1 + 3957 0.68 0.104121
Target:  5'- -gCGGCacaggugccaCCGC-CCCgAGACAGGggGaCCg -3'
miRNA:   3'- uaGCCG----------GGCGuGGG-UCUGUUCuuC-GG- -5'
3300 5' -57.8 NC_001545.1 + 6902 0.68 0.098917
Target:  5'- -gUGGCCUGCGCCCGccucuccacgacccuGACAccGAGGCa -3'
miRNA:   3'- uaGCCGGGCGUGGGU---------------CUGUu-CUUCGg -5'
3300 5' -57.8 NC_001545.1 + 1752 0.69 0.088662
Target:  5'- -aCGGCCCGUggcucACCCuuGACGAGccGGGCg -3'
miRNA:   3'- uaGCCGGGCG-----UGGGu-CUGUUC--UUCGg -5'
3300 5' -57.8 NC_001545.1 + 1948 0.7 0.070648
Target:  5'- cGUCGGCCCagggGCGCUCGGgu-GGAGGCa -3'
miRNA:   3'- -UAGCCGGG----CGUGGGUCuguUCUUCGg -5'
3300 5' -57.8 NC_001545.1 + 3073 0.7 0.066183
Target:  5'- gGUCGGCCCGgguCACCggcgGGGCAAGAuGCg -3'
miRNA:   3'- -UAGCCGGGC---GUGGg---UCUGUUCUuCGg -5'
3300 5' -57.8 NC_001545.1 + 5511 0.71 0.059992
Target:  5'- cUUGGCCCaCGCCCGGAUcucaAGGCCg -3'
miRNA:   3'- uAGCCGGGcGUGGGUCUGuuc-UUCGG- -5'
3300 5' -57.8 NC_001545.1 + 981 0.72 0.04765
Target:  5'- aGUCGGaCCCGCGCgCUGGGuuGGAGGCUg -3'
miRNA:   3'- -UAGCC-GGGCGUG-GGUCUguUCUUCGG- -5'
3300 5' -57.8 NC_001545.1 + 4502 0.73 0.037797
Target:  5'- aAUCGaGcCCCGCGCgCAGGCGGGccGCCc -3'
miRNA:   3'- -UAGC-C-GGGCGUGgGUCUGUUCuuCGG- -5'
3300 5' -57.8 NC_001545.1 + 7831 1.1 3e-05
Target:  5'- cAUCGGCCCGCACCCAGACAAGAAGCCg -3'
miRNA:   3'- -UAGCCGGGCGUGGGUCUGUUCUUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.