miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3303 3' -52.4 NC_001545.1 + 5841 0.66 0.37425
Target:  5'- -cGCCgcuuGUGCGCuCGCaGCCGGUcucAGugGAg -3'
miRNA:   3'- caCGG----UAUGUG-GUG-CGGCCA---UUugCU- -5'
3303 3' -52.4 NC_001545.1 + 2679 0.66 0.37425
Target:  5'- -cGCCAcu-GCCuCGCCGGUGgggcauggGGCGAg -3'
miRNA:   3'- caCGGUaugUGGuGCGGCCAU--------UUGCU- -5'
3303 3' -52.4 NC_001545.1 + 1119 0.66 0.364118
Target:  5'- uGUGCCAcaGCAUCACGCucgCGGgcAAUGu -3'
miRNA:   3'- -CACGGUa-UGUGGUGCG---GCCauUUGCu -5'
3303 3' -52.4 NC_001545.1 + 7748 0.66 0.354178
Target:  5'- -cGCCAcUGCgccggcccccuGCCACGCCGGccucAAUGAc -3'
miRNA:   3'- caCGGU-AUG-----------UGGUGCGGCCau--UUGCU- -5'
3303 3' -52.4 NC_001545.1 + 2246 0.66 0.354178
Target:  5'- -cGCCGUGCGCgGCG-CGGc-GGCGGg -3'
miRNA:   3'- caCGGUAUGUGgUGCgGCCauUUGCU- -5'
3303 3' -52.4 NC_001545.1 + 7824 0.66 0.344432
Target:  5'- -cGCC-UGCGCCACGgcgcugacacCCGGU--GCGGu -3'
miRNA:   3'- caCGGuAUGUGGUGC----------GGCCAuuUGCU- -5'
3303 3' -52.4 NC_001545.1 + 2182 0.66 0.344432
Target:  5'- -gGCCAgcgcGCACgGCGgCGGUGAccGCGu -3'
miRNA:   3'- caCGGUa---UGUGgUGCgGCCAUU--UGCu -5'
3303 3' -52.4 NC_001545.1 + 5888 0.66 0.341546
Target:  5'- -gGCCAUGCacaugGCCACGgUGGUGuugugcagcagcguGGCGGg -3'
miRNA:   3'- caCGGUAUG-----UGGUGCgGCCAU--------------UUGCU- -5'
3303 3' -52.4 NC_001545.1 + 3553 0.66 0.334879
Target:  5'- gGUGCCccaaGUGCGCCuACGgCCGcGcccUGAGCGAa -3'
miRNA:   3'- -CACGG----UAUGUGG-UGC-GGC-C---AUUUGCU- -5'
3303 3' -52.4 NC_001545.1 + 6915 0.67 0.31636
Target:  5'- -gGCCAcGCGCCACGgCUGcuugGAACGGg -3'
miRNA:   3'- caCGGUaUGUGGUGC-GGCca--UUUGCU- -5'
3303 3' -52.4 NC_001545.1 + 4222 0.67 0.298624
Target:  5'- -cGCCAccUACGa-GCGCCGGcuGACGAa -3'
miRNA:   3'- caCGGU--AUGUggUGCGGCCauUUGCU- -5'
3303 3' -52.4 NC_001545.1 + 5115 0.67 0.298624
Target:  5'- -cGCCGUGCggcgcuACCGCGCgGGcgagGAugGGu -3'
miRNA:   3'- caCGGUAUG------UGGUGCGgCCa---UUugCU- -5'
3303 3' -52.4 NC_001545.1 + 2795 0.7 0.172539
Target:  5'- -cGCUAgcCGCCGCGCguCGGUGGGCGu -3'
miRNA:   3'- caCGGUauGUGGUGCG--GCCAUUUGCu -5'
3303 3' -52.4 NC_001545.1 + 9293 0.71 0.161917
Target:  5'- aGUGCgGUACccCCGCGCUGGUGGAa-- -3'
miRNA:   3'- -CACGgUAUGu-GGUGCGGCCAUUUgcu -5'
3303 3' -52.4 NC_001545.1 + 9531 1.09 0.000172
Target:  5'- uGUGCCAUACACCACGCCGGUAAACGAu -3'
miRNA:   3'- -CACGGUAUGUGGUGCGGCCAUUUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.