miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33060 5' -59.9 NC_007497.1 + 10101 0.66 0.357568
Target:  5'- --uCUGCgcgCGcagGCUGCCGCUcggaucGCAGCa -3'
miRNA:   3'- aacGACGa--GCa--CGACGGCGAc-----CGUCG- -5'
33060 5' -59.9 NC_007497.1 + 38899 0.66 0.324307
Target:  5'- aUGUUGCUCGac--GCCGCgacacagucGGCGGCg -3'
miRNA:   3'- aACGACGAGCacgaCGGCGa--------CCGUCG- -5'
33060 5' -59.9 NC_007497.1 + 41586 0.67 0.286046
Target:  5'- -gGCgGCUCGUGCcuuccUGCCggaaaagauGCUGGguCAGCg -3'
miRNA:   3'- aaCGaCGAGCACG-----ACGG---------CGACC--GUCG- -5'
33060 5' -59.9 NC_007497.1 + 16843 0.67 0.278835
Target:  5'- -gGCUGCUCGUccGCcGgCGC-GGguGCg -3'
miRNA:   3'- aaCGACGAGCA--CGaCgGCGaCCguCG- -5'
33060 5' -59.9 NC_007497.1 + 41600 0.68 0.271769
Target:  5'- -aGCUGUUCGa--UGCCGCUGcccCAGCu -3'
miRNA:   3'- aaCGACGAGCacgACGGCGACc--GUCG- -5'
33060 5' -59.9 NC_007497.1 + 26733 0.68 0.264848
Target:  5'- -cGUUGCUCG-GCggUGCCuGUaccgaUGGCGGCa -3'
miRNA:   3'- aaCGACGAGCaCG--ACGG-CG-----ACCGUCG- -5'
33060 5' -59.9 NC_007497.1 + 32323 0.68 0.264848
Target:  5'- -gGCaGCg-GUGCUGgUGCUGGCGGg -3'
miRNA:   3'- aaCGaCGagCACGACgGCGACCGUCg -5'
33060 5' -59.9 NC_007497.1 + 4278 0.68 0.25807
Target:  5'- aUGCUcgGCuUCGUGCgcauggcGCCGgaaUUGGCGGCg -3'
miRNA:   3'- aACGA--CG-AGCACGa------CGGC---GACCGUCG- -5'
33060 5' -59.9 NC_007497.1 + 17585 0.68 0.25807
Target:  5'- aUGCgGCgCGUGCaaguuCCGCgcgGGCGGCg -3'
miRNA:   3'- aACGaCGaGCACGac---GGCGa--CCGUCG- -5'
33060 5' -59.9 NC_007497.1 + 25474 0.68 0.254072
Target:  5'- -cGCUGCggacggaagcggaaaUCG-GCUGgUGCUGGaCGGCa -3'
miRNA:   3'- aaCGACG---------------AGCaCGACgGCGACC-GUCG- -5'
33060 5' -59.9 NC_007497.1 + 33582 0.68 0.251435
Target:  5'- gUUGCacggGCgCGUGCUGCUGCgcugGGUcagaaAGCa -3'
miRNA:   3'- -AACGa---CGaGCACGACGGCGa---CCG-----UCG- -5'
33060 5' -59.9 NC_007497.1 + 17310 0.68 0.236707
Target:  5'- -cGCUGCUCGUccgucaGCccggcccgagcgucUGCCuGCgcgGGCGGCu -3'
miRNA:   3'- aaCGACGAGCA------CG--------------ACGG-CGa--CCGUCG- -5'
33060 5' -59.9 NC_007497.1 + 20225 0.69 0.226292
Target:  5'- -cGCUuCUCcgauccgaaGCagGCCGCUGGCAGCa -3'
miRNA:   3'- aaCGAcGAGca-------CGa-CGGCGACCGUCG- -5'
33060 5' -59.9 NC_007497.1 + 14783 0.69 0.220349
Target:  5'- -gGCuUGCUCGUcGCcGaCUGCUcGGCGGCa -3'
miRNA:   3'- aaCG-ACGAGCA-CGaC-GGCGA-CCGUCG- -5'
33060 5' -59.9 NC_007497.1 + 24074 0.7 0.172653
Target:  5'- -cGUUGUUgGgGCUGCUGC-GGCAGCc -3'
miRNA:   3'- aaCGACGAgCaCGACGGCGaCCGUCG- -5'
33060 5' -59.9 NC_007497.1 + 1126 0.73 0.116657
Target:  5'- cUGCcgUGCUCGUGUggcaagucgUGCUGUucUGGCAGCc -3'
miRNA:   3'- aACG--ACGAGCACG---------ACGGCG--ACCGUCG- -5'
33060 5' -59.9 NC_007497.1 + 23295 0.73 0.116657
Target:  5'- -cGCUGCUgcagGCUGCCaGC-GGCAGCa -3'
miRNA:   3'- aaCGACGAgca-CGACGG-CGaCCGUCG- -5'
33060 5' -59.9 NC_007497.1 + 23376 1.08 0.000221
Target:  5'- uUUGCUGCUCGUGCUGCCGCUGGCAGCc -3'
miRNA:   3'- -AACGACGAGCACGACGGCGACCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.