miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33067 5' -54.3 NC_007497.1 + 25452 0.66 0.708395
Target:  5'- cGGCugGUGcuGGACGGCaguaGCGUgcgcgUCuauGACg -3'
miRNA:   3'- cCCGugCAC--CCUGCCG----UGCA-----AGu--UUG- -5'
33067 5' -54.3 NC_007497.1 + 40140 0.66 0.708395
Target:  5'- aGGcGCACGUGaagcGCGGCgACGUgCAGGCc -3'
miRNA:   3'- -CC-CGUGCACcc--UGCCG-UGCAaGUUUG- -5'
33067 5' -54.3 NC_007497.1 + 9245 0.66 0.708394
Target:  5'- cGGGCuugauGCGUGGGGCcgaaGGCGaugUCAAuaGCa -3'
miRNA:   3'- -CCCG-----UGCACCCUG----CCGUgcaAGUU--UG- -5'
33067 5' -54.3 NC_007497.1 + 33004 0.66 0.697422
Target:  5'- aGGCGCGcGaaaaGACGGCACGUU-GGGCu -3'
miRNA:   3'- cCCGUGCaCc---CUGCCGUGCAAgUUUG- -5'
33067 5' -54.3 NC_007497.1 + 4103 0.67 0.685277
Target:  5'- cGGGgACGcGGcggccgaGACGGCACGgcgCGAAUu -3'
miRNA:   3'- -CCCgUGCaCC-------CUGCCGUGCaa-GUUUG- -5'
33067 5' -54.3 NC_007497.1 + 29506 0.67 0.675292
Target:  5'- cGGUugGUGGGcugACGGcCAC--UCGAACc -3'
miRNA:   3'- cCCGugCACCC---UGCC-GUGcaAGUUUG- -5'
33067 5' -54.3 NC_007497.1 + 29180 0.67 0.664157
Target:  5'- cGGGCGCGUGcauCGGCugGcuguUUCGucGACa -3'
miRNA:   3'- -CCCGUGCACccuGCCGugC----AAGU--UUG- -5'
33067 5' -54.3 NC_007497.1 + 19456 0.67 0.630612
Target:  5'- aGGGCGCacaGGACGGCAUGaaguugUCGauGACa -3'
miRNA:   3'- -CCCGUGcacCCUGCCGUGCa-----AGU--UUG- -5'
33067 5' -54.3 NC_007497.1 + 17582 0.68 0.608238
Target:  5'- cGGCGCGUGcaaguuccgcgcGGGCGGCGucuCGaucaUCAAGCg -3'
miRNA:   3'- cCCGUGCAC------------CCUGCCGU---GCa---AGUUUG- -5'
33067 5' -54.3 NC_007497.1 + 39756 0.68 0.574859
Target:  5'- aGGCAaagcguuccuCGcUGGcGACGGCACGaaCAAGCc -3'
miRNA:   3'- cCCGU----------GC-ACC-CUGCCGUGCaaGUUUG- -5'
33067 5' -54.3 NC_007497.1 + 32504 0.69 0.552835
Target:  5'- cGGcCACGUcacGGGGCcgGGCACGUcgaCGAGCg -3'
miRNA:   3'- cCC-GUGCA---CCCUG--CCGUGCAa--GUUUG- -5'
33067 5' -54.3 NC_007497.1 + 6920 0.7 0.457736
Target:  5'- cGGGCGCcauuggGUGaucucgaaGGAUGGCGCGUUCGc-- -3'
miRNA:   3'- -CCCGUG------CAC--------CCUGCCGUGCAAGUuug -5'
33067 5' -54.3 NC_007497.1 + 3999 0.72 0.390173
Target:  5'- cGGCACGaagaacgucGGGACGGCACGcgugCAcGACg -3'
miRNA:   3'- cCCGUGCa--------CCCUGCCGUGCaa--GU-UUG- -5'
33067 5' -54.3 NC_007497.1 + 2957 0.78 0.165707
Target:  5'- cGGCGCGUGuGGACGGCgACGguccgaUUAAGCa -3'
miRNA:   3'- cCCGUGCAC-CCUGCCG-UGCa-----AGUUUG- -5'
33067 5' -54.3 NC_007497.1 + 27861 1.11 0.000712
Target:  5'- cGGGCACGUGGGACGGCACGUUCAAACc -3'
miRNA:   3'- -CCCGUGCACCCUGCCGUGCAAGUUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.