miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3307 3' -51.2 NC_001545.1 + 8159 0.66 0.448536
Target:  5'- uGCC----GCCGCGCC--UGUCGccGCCg -3'
miRNA:   3'- gUGGuuacUGGCGCGGauACAGU--UGG- -5'
3307 3' -51.2 NC_001545.1 + 9399 0.66 0.448536
Target:  5'- -cCCAGggggGACgGCGCCgagGUCcucGCCa -3'
miRNA:   3'- guGGUUa---CUGgCGCGGauaCAGu--UGG- -5'
3307 3' -51.2 NC_001545.1 + 9288 0.66 0.425869
Target:  5'- cUACCAGUGcgguacccCCGCGCUgGUGgaaGGCCu -3'
miRNA:   3'- -GUGGUUACu-------GGCGCGGaUACag-UUGG- -5'
3307 3' -51.2 NC_001545.1 + 7053 0.66 0.414794
Target:  5'- gGCCGcuggGACCcuGCGCUcAUGUaCAACCc -3'
miRNA:   3'- gUGGUua--CUGG--CGCGGaUACA-GUUGG- -5'
3307 3' -51.2 NC_001545.1 + 6067 0.66 0.414794
Target:  5'- gCACCGcgG-CCG-GCCUcuuccaugAUGUCAugCa -3'
miRNA:   3'- -GUGGUuaCuGGCgCGGA--------UACAGUugG- -5'
3307 3' -51.2 NC_001545.1 + 7594 0.66 0.414794
Target:  5'- aGCCAGUGGCCGgGCagcacGUCG-CUg -3'
miRNA:   3'- gUGGUUACUGGCgCGgaua-CAGUuGG- -5'
3307 3' -51.2 NC_001545.1 + 7512 0.67 0.382657
Target:  5'- gGCCAucAUGGCgGCaCCUugcgcGUCGGCCa -3'
miRNA:   3'- gUGGU--UACUGgCGcGGAua---CAGUUGG- -5'
3307 3' -51.2 NC_001545.1 + 661 0.67 0.342463
Target:  5'- uCGCCGAcgugGGCCGCaagggcgaccgGCCacaaGUCAACCg -3'
miRNA:   3'- -GUGGUUa---CUGGCG-----------CGGaua-CAGUUGG- -5'
3307 3' -51.2 NC_001545.1 + 7873 0.68 0.332902
Target:  5'- gAUCAAccGACCGCaCCggGUGUCAGCg -3'
miRNA:   3'- gUGGUUa-CUGGCGcGGa-UACAGUUGg -5'
3307 3' -51.2 NC_001545.1 + 3043 0.68 0.305405
Target:  5'- cCGCCGGUGAcCCGgGCCgaccgGcUCAGCg -3'
miRNA:   3'- -GUGGUUACU-GGCgCGGaua--C-AGUUGg -5'
3307 3' -51.2 NC_001545.1 + 2168 0.7 0.248107
Target:  5'- gCGgCGGUGACCGCGUUUGcGUCGAa- -3'
miRNA:   3'- -GUgGUUACUGGCGCGGAUaCAGUUgg -5'
3307 3' -51.2 NC_001545.1 + 8994 0.74 0.127703
Target:  5'- gCGCCcccGGCUGCGCCUG-GUCGACg -3'
miRNA:   3'- -GUGGuuaCUGGCGCGGAUaCAGUUGg -5'
3307 3' -51.2 NC_001545.1 + 3166 1.12 0.000142
Target:  5'- uCACCAAUGACCGCGCCUAUGUCAACCu -3'
miRNA:   3'- -GUGGUUACUGGCGCGGAUACAGUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.