miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3307 5' -63.6 NC_001545.1 + 3098 0.66 0.06777
Target:  5'- uGGGgGCGACgCGCuGCGCUgaGCCGGUc- -3'
miRNA:   3'- -CUCgCGCUG-GCGcCGCGG--UGGUCGac -5'
3307 5' -63.6 NC_001545.1 + 9474 0.66 0.06777
Target:  5'- -cGCGCGAUCGCucuCGCCcCCgcAGCUGa -3'
miRNA:   3'- cuCGCGCUGGCGcc-GCGGuGG--UCGAC- -5'
3307 5' -63.6 NC_001545.1 + 2769 0.66 0.06777
Target:  5'- cGAGCGCGccuACCGCaGCaucgucgcgcuaGCCGCCGcGCg- -3'
miRNA:   3'- -CUCGCGC---UGGCGcCG------------CGGUGGU-CGac -5'
3307 5' -63.6 NC_001545.1 + 9460 0.66 0.06777
Target:  5'- -cGCGCGACCGCGcGgGUCAUCGa--- -3'
miRNA:   3'- cuCGCGCUGGCGC-CgCGGUGGUcgac -5'
3307 5' -63.6 NC_001545.1 + 5294 0.66 0.063639
Target:  5'- uGGGCGUGGCCGCGcGggaGCuCACCGaccGCUa -3'
miRNA:   3'- -CUCGCGCUGGCGC-Cg--CG-GUGGU---CGAc -5'
3307 5' -63.6 NC_001545.1 + 2285 0.66 0.057896
Target:  5'- -cGCGCGACC-CGcCGCCGCCcGCc- -3'
miRNA:   3'- cuCGCGCUGGcGCcGCGGUGGuCGac -5'
3307 5' -63.6 NC_001545.1 + 1678 0.67 0.056095
Target:  5'- ---gGCGGCCGCGcccGCcCCGCCGGCUc -3'
miRNA:   3'- cucgCGCUGGCGC---CGcGGUGGUCGAc -5'
3307 5' -63.6 NC_001545.1 + 6559 0.67 0.056095
Target:  5'- -cGCGCccuGCgCGCGGaacuCGCCGCCGGCg- -3'
miRNA:   3'- cuCGCGc--UG-GCGCC----GCGGUGGUCGac -5'
3307 5' -63.6 NC_001545.1 + 2366 0.67 0.054349
Target:  5'- cGGCG-GAUCGCGcGCGUgaCGCCgAGCUGg -3'
miRNA:   3'- cUCGCgCUGGCGC-CGCG--GUGG-UCGAC- -5'
3307 5' -63.6 NC_001545.1 + 1255 0.67 0.051664
Target:  5'- aGGCGCGAagUGCGccgccgacucuuugaGCGUgGCCGGCUGg -3'
miRNA:   3'- cUCGCGCUg-GCGC---------------CGCGgUGGUCGAC- -5'
3307 5' -63.6 NC_001545.1 + 7808 0.67 0.049421
Target:  5'- uGGGUGCgGGCCGauGCGCCugcGCCAcggcGCUGa -3'
miRNA:   3'- -CUCGCG-CUGGCgcCGCGG---UGGU----CGAC- -5'
3307 5' -63.6 NC_001545.1 + 7407 0.67 0.047878
Target:  5'- cGGCGCG--CGCGGUGCCAaCGGCg- -3'
miRNA:   3'- cUCGCGCugGCGCCGCGGUgGUCGac -5'
3307 5' -63.6 NC_001545.1 + 1403 0.68 0.046974
Target:  5'- aGGCgGCGACCGCGGCGUCcuguucccacuccuCCAuGCg- -3'
miRNA:   3'- cUCG-CGCUGGCGCCGCGGu-------------GGU-CGac -5'
3307 5' -63.6 NC_001545.1 + 3526 0.68 0.04493
Target:  5'- -uGCGCaacguuGGCgGCGGCGCggaGCCAGCa- -3'
miRNA:   3'- cuCGCG------CUGgCGCCGCGg--UGGUCGac -5'
3307 5' -63.6 NC_001545.1 + 2183 0.68 0.04493
Target:  5'- --cCGCGGCCGCGucacCGCCAcCCGGCg- -3'
miRNA:   3'- cucGCGCUGGCGCc---GCGGU-GGUCGac -5'
3307 5' -63.6 NC_001545.1 + 5817 0.68 0.04493
Target:  5'- cGAGCGCacaaGCGGCGagcCCGCCAcGCUGc -3'
miRNA:   3'- -CUCGCGcuggCGCCGC---GGUGGU-CGAC- -5'
3307 5' -63.6 NC_001545.1 + 3344 0.69 0.038315
Target:  5'- cGGGaGUGACaUGUGGCGCUGCCgcGGCUGg -3'
miRNA:   3'- -CUCgCGCUG-GCGCCGCGGUGG--UCGAC- -5'
3307 5' -63.6 NC_001545.1 + 1700 0.69 0.032657
Target:  5'- cGGGCGCGGCCGCcguaucGGCGCgCGCgCGGa-- -3'
miRNA:   3'- -CUCGCGCUGGCG------CCGCG-GUG-GUCgac -5'
3307 5' -63.6 NC_001545.1 + 4575 0.7 0.030533
Target:  5'- -cGCGCGAaaCCGU-GCGCCGCCuucacgaGGCUGg -3'
miRNA:   3'- cuCGCGCU--GGCGcCGCGGUGG-------UCGAC- -5'
3307 5' -63.6 NC_001545.1 + 386 0.7 0.026944
Target:  5'- cAGUGCGACCcaGCGGCGCUcaacGCgAGCg- -3'
miRNA:   3'- cUCGCGCUGG--CGCCGCGG----UGgUCGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.