Results 1 - 9 of 9 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 3308 | 3' | -63.5 | NC_001545.1 | + | 2924 | 0.66 | 0.059238 |
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Target: 5'- gACGGGCuCGGuGCGCgUaGCCGCGa-- -3' miRNA: 3'- -UGCCCG-GCCuCGUGgAgCGGUGCgua -5' |
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| 3308 | 3' | -63.5 | NC_001545.1 | + | 5296 | 0.67 | 0.055597 |
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Target: 5'- gGCGuGGCCgcgcgGGAGCucACCgacCGCUACGCGc -3' miRNA: 3'- -UGC-CCGG-----CCUCG--UGGa--GCGGUGCGUa -5' |
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| 3308 | 3' | -63.5 | NC_001545.1 | + | 5185 | 0.67 | 0.048956 |
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Target: 5'- gGCGGGCCacagcagugcGGAGgGucgacccauCCUCGCCcGCGCGg -3' miRNA: 3'- -UGCCCGG----------CCUCgU---------GGAGCGG-UGCGUa -5' |
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| 3308 | 3' | -63.5 | NC_001545.1 | + | 1848 | 0.67 | 0.0488 |
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Target: 5'- -aGGGCCccGGAGCGgCUgGCCAaguggguCGCAUa -3' miRNA: 3'- ugCCCGG--CCUCGUgGAgCGGU-------GCGUA- -5' |
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| 3308 | 3' | -63.5 | NC_001545.1 | + | 3926 | 0.68 | 0.045931 |
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Target: 5'- uCGGGgCGGuGGCACCUgUGCCGCGa-- -3' miRNA: 3'- uGCCCgGCC-UCGUGGA-GCGGUGCgua -5' |
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| 3308 | 3' | -63.5 | NC_001545.1 | + | 7419 | 0.68 | 0.041734 |
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Target: 5'- -gGGGCUGGAGC-CCg-GCgCGCGCGg -3' miRNA: 3'- ugCCCGGCCUCGuGGagCG-GUGCGUa -5' |
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| 3308 | 3' | -63.5 | NC_001545.1 | + | 7086 | 0.71 | 0.022654 |
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Target: 5'- uGCGGGCCcGAGcCGCCcgcucacgUCGuCCGCGCGUa -3' miRNA: 3'- -UGCCCGGcCUC-GUGG--------AGC-GGUGCGUA- -5' |
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| 3308 | 3' | -63.5 | NC_001545.1 | + | 7812 | 0.75 | 0.01075 |
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Target: 5'- uGCGGGCCGauGCGCCUgCGCCACgGCGc -3' miRNA: 3'- -UGCCCGGCcuCGUGGA-GCGGUG-CGUa -5' |
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| 3308 | 3' | -63.5 | NC_001545.1 | + | 3255 | 1.04 | 2.5e-05 |
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Target: 5'- uACGGGCCGGAGCACCUCGCCACGCAUu -3' miRNA: 3'- -UGCCCGGCCUCGUGGAGCGGUGCGUA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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