miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33087 3' -51.9 NC_007497.1 + 35819 0.67 0.818484
Target:  5'- cGUCGAGCGGcugccgcGUUGCUUGCGcgaugcgcagcACGUCGu -3'
miRNA:   3'- -CGGCUUGCC-------CGACGAAUGCa----------UGUAGC- -5'
33087 3' -51.9 NC_007497.1 + 4282 0.67 0.789922
Target:  5'- cGCCGAucagcACGGGCggcugGCUUuuGUGCccgGUCc -3'
miRNA:   3'- -CGGCU-----UGCCCGa----CGAAugCAUG---UAGc -5'
33087 3' -51.9 NC_007497.1 + 40575 0.67 0.779717
Target:  5'- cGCCGGAaacgccacgcCGGGCgcugGCgaagACGUugcaGCGUCGc -3'
miRNA:   3'- -CGGCUU----------GCCCGa---CGaa--UGCA----UGUAGC- -5'
33087 3' -51.9 NC_007497.1 + 21334 0.68 0.75883
Target:  5'- cGCCGGACGGcucaGCUcGCUgucgcuagacaGCGaGCAUCGg -3'
miRNA:   3'- -CGGCUUGCC----CGA-CGAa----------UGCaUGUAGC- -5'
33087 3' -51.9 NC_007497.1 + 30942 0.68 0.75883
Target:  5'- cGUCGAuuguugGCGGGCaGUUUGCGgGgAUCGa -3'
miRNA:   3'- -CGGCU------UGCCCGaCGAAUGCaUgUAGC- -5'
33087 3' -51.9 NC_007497.1 + 15722 0.68 0.748174
Target:  5'- cGCUGAA-GGaGaCUGC-UACGUGCGUUGg -3'
miRNA:   3'- -CGGCUUgCC-C-GACGaAUGCAUGUAGC- -5'
33087 3' -51.9 NC_007497.1 + 16853 0.68 0.726498
Target:  5'- cGCUGAuGCGGGCUGCU--CGUcCGcCGg -3'
miRNA:   3'- -CGGCU-UGCCCGACGAauGCAuGUaGC- -5'
33087 3' -51.9 NC_007497.1 + 40316 0.7 0.648124
Target:  5'- cGCCGugaaGGCGGGuCUGCcgACGUccgacGCGUUGg -3'
miRNA:   3'- -CGGC----UUGCCC-GACGaaUGCA-----UGUAGC- -5'
33087 3' -51.9 NC_007497.1 + 23573 0.72 0.535616
Target:  5'- uGCUGGGCGcGGCgGCggGCGccgGCGUCGu -3'
miRNA:   3'- -CGGCUUGC-CCGaCGaaUGCa--UGUAGC- -5'
33087 3' -51.9 NC_007497.1 + 27048 0.72 0.503013
Target:  5'- aGUCGGugGacGGCgacacGCUUACGUugGUCGa -3'
miRNA:   3'- -CGGCUugC--CCGa----CGAAUGCAugUAGC- -5'
33087 3' -51.9 NC_007497.1 + 25768 0.76 0.306234
Target:  5'- cUCGGACGGGC-GC--ACGUACAUCGc -3'
miRNA:   3'- cGGCUUGCCCGaCGaaUGCAUGUAGC- -5'
33087 3' -51.9 NC_007497.1 + 39615 0.77 0.268985
Target:  5'- cGCCGAACGGG-UGCUUcGCG-GCAUUGg -3'
miRNA:   3'- -CGGCUUGCCCgACGAA-UGCaUGUAGC- -5'
33087 3' -51.9 NC_007497.1 + 39721 1.11 0.00141
Target:  5'- aGCCGAACGGGCUGCUUACGUACAUCGc -3'
miRNA:   3'- -CGGCUUGCCCGACGAAUGCAUGUAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.