miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3309 5' -61 NC_001545.1 + 4774 0.66 0.127207
Target:  5'- gCUCGuGGAguagaguGCGUCGgaGGCCCGGGu -3'
miRNA:   3'- gGAGCcCCUac-----UGCGGUa-CCGGGCCC- -5'
3309 5' -61 NC_001545.1 + 5908 0.66 0.123427
Target:  5'- cCUUUGGGGAccaugcgcaUGGCcauGCaCAUGGCCaCGGu -3'
miRNA:   3'- -GGAGCCCCU---------ACUG---CG-GUACCGG-GCCc -5'
3309 5' -61 NC_001545.1 + 9279 0.66 0.119029
Target:  5'- -aUUGcGGGGUGGCGCUaacgugcGUGGCagggccaCCGGGc -3'
miRNA:   3'- ggAGC-CCCUACUGCGG-------UACCG-------GGCCC- -5'
3309 5' -61 NC_001545.1 + 3140 0.66 0.116178
Target:  5'- uCCgCGGGGcucgGGCGCgGUGGCauccccaaGGGg -3'
miRNA:   3'- -GGaGCCCCua--CUGCGgUACCGgg------CCC- -5'
3309 5' -61 NC_001545.1 + 6828 0.66 0.114083
Target:  5'- --gCGGGGGUugaggcuguuguggcGGCGCCcgcgAUGGCUuCGGGg -3'
miRNA:   3'- ggaGCCCCUA---------------CUGCGG----UACCGG-GCCC- -5'
3309 5' -61 NC_001545.1 + 6693 0.66 0.109329
Target:  5'- --cCGGGGccGugGCCAgcgcagggacUGGUCCaGGGc -3'
miRNA:   3'- ggaGCCCCuaCugCGGU----------ACCGGG-CCC- -5'
3309 5' -61 NC_001545.1 + 6755 0.66 0.109329
Target:  5'- uCCUcCGGGGggGGCGg---GGCCCuGGa -3'
miRNA:   3'- -GGA-GCCCCuaCUGCgguaCCGGGcCC- -5'
3309 5' -61 NC_001545.1 + 1008 0.67 0.106048
Target:  5'- aCCUCGGcGAgaugGACGa---GGUCCGGGa -3'
miRNA:   3'- -GGAGCCcCUa---CUGCgguaCCGGGCCC- -5'
3309 5' -61 NC_001545.1 + 9202 0.67 0.10192
Target:  5'- cCCUUGGGGcUGAaguucaagacaguuCGCCcgGUGGCCCu-- -3'
miRNA:   3'- -GGAGCCCCuACU--------------GCGG--UACCGGGccc -5'
3309 5' -61 NC_001545.1 + 3923 0.67 0.100989
Target:  5'- gUCUCGGGGcgGUGGCaccuguGCCGcgaccgacgaggggcUGGCCCaGGc -3'
miRNA:   3'- -GGAGCCCC--UACUG------CGGU---------------ACCGGGcCC- -5'
3309 5' -61 NC_001545.1 + 3256 0.68 0.08555
Target:  5'- aCCUCGGGaAUG-CG-CAUGGCCCa-- -3'
miRNA:   3'- -GGAGCCCcUACuGCgGUACCGGGccc -5'
3309 5' -61 NC_001545.1 + 3099 0.68 0.08555
Target:  5'- --cUGGGGgcGACgcgcugcgcugaGCCGgucGGCCCGGGu -3'
miRNA:   3'- ggaGCCCCuaCUG------------CGGUa--CCGGGCCC- -5'
3309 5' -61 NC_001545.1 + 355 0.68 0.08555
Target:  5'- aCCUCGcGGAgcAgGCCcgGGCuuGGGu -3'
miRNA:   3'- -GGAGCcCCUacUgCGGuaCCGggCCC- -5'
3309 5' -61 NC_001545.1 + 3097 0.69 0.066749
Target:  5'- cCCUUGGGGAUGccaccGCGCCcgaGCCCcgcggaugccaGGGg -3'
miRNA:   3'- -GGAGCCCCUAC-----UGCGGuacCGGG-----------CCC- -5'
3309 5' -61 NC_001545.1 + 2346 0.72 0.04038
Target:  5'- aCCagCGcGGGGUGGCGCgGgcgGGCUgGGGg -3'
miRNA:   3'- -GGa-GC-CCCUACUGCGgUa--CCGGgCCC- -5'
3309 5' -61 NC_001545.1 + 4928 0.72 0.039122
Target:  5'- gCCUCGGGGAUGcCGUCGgcgGGCggcaaCGGu -3'
miRNA:   3'- -GGAGCCCCUACuGCGGUa--CCGg----GCCc -5'
3309 5' -61 NC_001545.1 + 3999 1.1 2e-05
Target:  5'- gCCUCGGGGAUGACGCCAUGGCCCGGGc -3'
miRNA:   3'- -GGAGCCCCUACUGCGGUACCGGGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.