Results 1 - 20 of 78 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33097 | 5' | -51.5 | NC_007497.1 | + | 315 | 1.11 | 0.001342 |
Target: 5'- gCCGAGAUCACGCAAGCAGAACACGCAa -3' miRNA: 3'- -GGCUCUAGUGCGUUCGUCUUGUGCGU- -5' |
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33097 | 5' | -51.5 | NC_007497.1 | + | 10350 | 0.83 | 0.115216 |
Target: 5'- uCCGGGAUCAUGCGAGCAGcGCgACGUc -3' miRNA: 3'- -GGCUCUAGUGCGUUCGUCuUG-UGCGu -5' |
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33097 | 5' | -51.5 | NC_007497.1 | + | 40113 | 0.77 | 0.267564 |
Target: 5'- uUCGGGAUCGCGC-AGCGGcuuCACGCc -3' miRNA: 3'- -GGCUCUAGUGCGuUCGUCuu-GUGCGu -5' |
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33097 | 5' | -51.5 | NC_007497.1 | + | 28116 | 0.76 | 0.321021 |
Target: 5'- aCGcGGUCACGCGAGCG--GCGCGCu -3' miRNA: 3'- gGCuCUAGUGCGUUCGUcuUGUGCGu -5' |
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33097 | 5' | -51.5 | NC_007497.1 | + | 34121 | 0.74 | 0.420283 |
Target: 5'- aCGAG-UCGCGCAAGCu---CGCGCGa -3' miRNA: 3'- gGCUCuAGUGCGUUCGucuuGUGCGU- -5' |
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33097 | 5' | -51.5 | NC_007497.1 | + | 11005 | 0.73 | 0.440229 |
Target: 5'- gCCGAGG-CGCgGCAGGCcggguugauugcGGGGCGCGCGg -3' miRNA: 3'- -GGCUCUaGUG-CGUUCG------------UCUUGUGCGU- -5' |
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33097 | 5' | -51.5 | NC_007497.1 | + | 10202 | 0.73 | 0.460703 |
Target: 5'- gCCGcGGUCGCGCAaacGGCGGccgccCGCGCAg -3' miRNA: 3'- -GGCuCUAGUGCGU---UCGUCuu---GUGCGU- -5' |
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33097 | 5' | -51.5 | NC_007497.1 | + | 10291 | 0.73 | 0.48167 |
Target: 5'- -aGAGAUCgcgGCGCAAG-GGGGCACGCc -3' miRNA: 3'- ggCUCUAG---UGCGUUCgUCUUGUGCGu -5' |
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33097 | 5' | -51.5 | NC_007497.1 | + | 43325 | 0.73 | 0.492326 |
Target: 5'- -gGAGAUCAC-CGAGaCGGAGCACgGCGu -3' miRNA: 3'- ggCUCUAGUGcGUUC-GUCUUGUG-CGU- -5' |
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33097 | 5' | -51.5 | NC_007497.1 | + | 1076 | 0.72 | 0.513953 |
Target: 5'- aCGgcAGGUCACGagGGGCAGcGCGCGCGa -3' miRNA: 3'- gGC--UCUAGUGCg-UUCGUCuUGUGCGU- -5' |
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33097 | 5' | -51.5 | NC_007497.1 | + | 18458 | 0.72 | 0.535958 |
Target: 5'- aCCGAGAUCugGUAcAGCcGGACGC-CGa -3' miRNA: 3'- -GGCUCUAGugCGU-UCGuCUUGUGcGU- -5' |
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33097 | 5' | -51.5 | NC_007497.1 | + | 11739 | 0.72 | 0.547085 |
Target: 5'- -aGAGGUCGCGCGagAGCuGGcCGCGCu -3' miRNA: 3'- ggCUCUAGUGCGU--UCGuCUuGUGCGu -5' |
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33097 | 5' | -51.5 | NC_007497.1 | + | 21623 | 0.72 | 0.547085 |
Target: 5'- aCGAGcgCGCGgGagagcuGGCGGAAUACGCu -3' miRNA: 3'- gGCUCuaGUGCgU------UCGUCUUGUGCGu -5' |
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33097 | 5' | -51.5 | NC_007497.1 | + | 10106 | 0.72 | 0.551556 |
Target: 5'- gCCGAGcgCgaaguagcgaucgcgACGCAGGCGcgcGAGCGCGCc -3' miRNA: 3'- -GGCUCuaG---------------UGCGUUCGU---CUUGUGCGu -5' |
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33097 | 5' | -51.5 | NC_007497.1 | + | 43938 | 0.71 | 0.569546 |
Target: 5'- ---cGGUCA-GCAAGCAGAACGcCGCGg -3' miRNA: 3'- ggcuCUAGUgCGUUCGUCUUGU-GCGU- -5' |
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33097 | 5' | -51.5 | NC_007497.1 | + | 42325 | 0.71 | 0.580864 |
Target: 5'- cCCGAGAucagggUCACGCAGcGCAGcAC-CGCc -3' miRNA: 3'- -GGCUCU------AGUGCGUU-CGUCuUGuGCGu -5' |
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33097 | 5' | -51.5 | NC_007497.1 | + | 9219 | 0.71 | 0.591089 |
Target: 5'- gCCGAcgcGAUCGCGCGcggcaugGGcCGGGGCACGUc -3' miRNA: 3'- -GGCU---CUAGUGCGU-------UC-GUCUUGUGCGu -5' |
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33097 | 5' | -51.5 | NC_007497.1 | + | 17658 | 0.7 | 0.615055 |
Target: 5'- gCCGAuc-CGCGCAAgGCGGGGCgGCGCAu -3' miRNA: 3'- -GGCUcuaGUGCGUU-CGUCUUG-UGCGU- -5' |
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33097 | 5' | -51.5 | NC_007497.1 | + | 9711 | 0.7 | 0.649388 |
Target: 5'- gCgGAGGUCgcgGCGCAGGCcGAgcuugccggcauGCGCGCGa -3' miRNA: 3'- -GgCUCUAG---UGCGUUCGuCU------------UGUGCGU- -5' |
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33097 | 5' | -51.5 | NC_007497.1 | + | 17020 | 0.7 | 0.649388 |
Target: 5'- gCGcAGG-CugGCAAGCAGGcCGCGCc -3' miRNA: 3'- gGC-UCUaGugCGUUCGUCUuGUGCGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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