miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3310 3' -54.8 NC_001545.1 + 7973 0.66 0.270485
Target:  5'- --cGGCuGGACUugcgcggcguGCCCGCccAUCCagGCg -3'
miRNA:   3'- cgaCCGuUCUGA----------UGGGCG--UAGGagCG- -5'
3310 3' -54.8 NC_001545.1 + 3289 0.66 0.247694
Target:  5'- uGCgUGGCGAGguGCUccgGCCCGUAgacaaccaCCUCGg -3'
miRNA:   3'- -CG-ACCGUUC--UGA---UGGGCGUa-------GGAGCg -5'
3310 3' -54.8 NC_001545.1 + 5189 0.66 0.243331
Target:  5'- uGCUGGCGGGccACaGCagugcggagggucgaCC-CAUCCUCGCc -3'
miRNA:   3'- -CGACCGUUC--UGaUG---------------GGcGUAGGAGCG- -5'
3310 3' -54.8 NC_001545.1 + 9396 0.66 0.240458
Target:  5'- --aGGgGGGACgGCgCCGagGUCCUCGCc -3'
miRNA:   3'- cgaCCgUUCUGaUG-GGCg-UAGGAGCG- -5'
3310 3' -54.8 NC_001545.1 + 4846 0.67 0.219804
Target:  5'- cGCUGGCAuuga---CCGCGUUgUCGCc -3'
miRNA:   3'- -CGACCGUucugaugGGCGUAGgAGCG- -5'
3310 3' -54.8 NC_001545.1 + 4337 0.67 0.200684
Target:  5'- gGCUGGCAAcGA--ACgCGCAguaCUCGCc -3'
miRNA:   3'- -CGACCGUU-CUgaUGgGCGUag-GAGCG- -5'
3310 3' -54.8 NC_001545.1 + 3502 0.68 0.188754
Target:  5'- aGCcaGCAGGugUuugggucuaGCUCGCcgCCUCGCg -3'
miRNA:   3'- -CGacCGUUCugA---------UGGGCGuaGGAGCG- -5'
3310 3' -54.8 NC_001545.1 + 2619 0.69 0.14251
Target:  5'- cGCU-GCAA-ACUGCCgGCG-CCUCGCc -3'
miRNA:   3'- -CGAcCGUUcUGAUGGgCGUaGGAGCG- -5'
3310 3' -54.8 NC_001545.1 + 1835 0.7 0.120366
Target:  5'- gGCUGGCcaagugggucgcauAAGACcagGgCCGCGUcagCCUCGCc -3'
miRNA:   3'- -CGACCG--------------UUCUGa--UgGGCGUA---GGAGCG- -5'
3310 3' -54.8 NC_001545.1 + 6221 0.71 0.10015
Target:  5'- uGCUGcGUAcuacGACUACagcgcggagCGCGUCCUCGCu -3'
miRNA:   3'- -CGAC-CGUu---CUGAUGg--------GCGUAGGAGCG- -5'
3310 3' -54.8 NC_001545.1 + 8423 0.72 0.093847
Target:  5'- gGCUugggGGCcuGGgUACCCGCAgccCCUUGCg -3'
miRNA:   3'- -CGA----CCGuuCUgAUGGGCGUa--GGAGCG- -5'
3310 3' -54.8 NC_001545.1 + 7209 0.73 0.069869
Target:  5'- cGCUGGCAccGACUGCUgCGCAUgCCagugCGCg -3'
miRNA:   3'- -CGACCGUu-CUGAUGG-GCGUA-GGa---GCG- -5'
3310 3' -54.8 NC_001545.1 + 4096 1.14 3.6e-05
Target:  5'- cGCUGGCAAGACUACCCGCAUCCUCGCu -3'
miRNA:   3'- -CGACCGUUCUGAUGGGCGUAGGAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.