Results 1 - 6 of 6 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 3310 | 5' | -53.6 | NC_001545.1 | + | 1502 | 0.66 | 0.323458 |
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Target: 5'- -aGCGAAGACCgccaUUGCGcgugcgCU-CCCCGc -3' miRNA: 3'- cgCGCUUCUGGa---AAUGCa-----GAcGGGGU- -5' |
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| 3310 | 5' | -53.6 | NC_001545.1 | + | 6833 | 0.66 | 0.322548 |
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Target: 5'- gGCGUGggGGC-------UCUGCCCCGc -3' miRNA: 3'- -CGCGCuuCUGgaaaugcAGACGGGGU- -5' |
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| 3310 | 5' | -53.6 | NC_001545.1 | + | 1402 | 0.66 | 0.296989 |
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Target: 5'- -gGCGgcGACCgcgGCGUcCUGuUCCCAc -3' miRNA: 3'- cgCGCuuCUGGaaaUGCA-GAC-GGGGU- -5' |
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| 3310 | 5' | -53.6 | NC_001545.1 | + | 4046 | 0.66 | 0.283575 |
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Target: 5'- aUGCGAGGGCCgcccgggccaugGCGUCauCCCCGa -3' miRNA: 3'- cGCGCUUCUGGaaa---------UGCAGacGGGGU- -5' |
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| 3310 | 5' | -53.6 | NC_001545.1 | + | 9361 | 0.69 | 0.19549 |
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Target: 5'- -gGCGAGGACCUcgGCG-CcGUCCCc -3' miRNA: 3'- cgCGCUUCUGGAaaUGCaGaCGGGGu -5' |
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| 3310 | 5' | -53.6 | NC_001545.1 | + | 4131 | 1.11 | 9e-05 |
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Target: 5'- cGCGCGAAGACCUUUACGUCUGCCCCAc -3' miRNA: 3'- -CGCGCUUCUGGAAAUGCAGACGGGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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