miRNA display CGI


Results 1 - 15 of 15 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3312 3' -59.6 NC_001545.1 + 2293 0.66 0.121075
Target:  5'- ---cCGCCGccgCCCGCCCCCagcccgcccGCGCc -3'
miRNA:   3'- aaaaGCGGUcuaGGGUGGGGG---------CGCGc -5'
3312 3' -59.6 NC_001545.1 + 6544 0.66 0.121075
Target:  5'- --cUCGaggcaCA-AUCCCGCgCCCUGCGCGc -3'
miRNA:   3'- aaaAGCg----GUcUAGGGUG-GGGGCGCGC- -5'
3312 3' -59.6 NC_001545.1 + 1905 0.66 0.121075
Target:  5'- ----aGCCuGGAgccCCCGCgCCUGCGCGc -3'
miRNA:   3'- aaaagCGG-UCUa--GGGUGgGGGCGCGC- -5'
3312 3' -59.6 NC_001545.1 + 3345 0.66 0.121075
Target:  5'- --cUCGCgGGggCCUgACCUCCGCGgGc -3'
miRNA:   3'- aaaAGCGgUCuaGGG-UGGGGGCGCgC- -5'
3312 3' -59.6 NC_001545.1 + 4546 0.66 0.11372
Target:  5'- ---cCGCCAGGUCgaccuucaccUCGCCuuCUCGCGCGa -3'
miRNA:   3'- aaaaGCGGUCUAG----------GGUGG--GGGCGCGC- -5'
3312 3' -59.6 NC_001545.1 + 8986 0.66 0.11372
Target:  5'- ---aCGCCAGAg--CGCCCCCGgcUGCGc -3'
miRNA:   3'- aaaaGCGGUCUaggGUGGGGGC--GCGC- -5'
3312 3' -59.6 NC_001545.1 + 6834 0.68 0.08283
Target:  5'- ---gCGUgGGggCUCugCCCCGCGCc -3'
miRNA:   3'- aaaaGCGgUCuaGGGugGGGGCGCGc -5'
3312 3' -59.6 NC_001545.1 + 783 0.68 0.072865
Target:  5'- ---cUGCCGGAcaccgCCCACCCCgGgCGCc -3'
miRNA:   3'- aaaaGCGGUCUa----GGGUGGGGgC-GCGc -5'
3312 3' -59.6 NC_001545.1 + 6796 0.69 0.068324
Target:  5'- ---cCGCCAcaacagCCUcaACCCCCGCGCa -3'
miRNA:   3'- aaaaGCGGUcua---GGG--UGGGGGCGCGc -5'
3312 3' -59.6 NC_001545.1 + 4459 0.69 0.066157
Target:  5'- ---cUGCUGGGcggCCCGCCUgCGCGCGg -3'
miRNA:   3'- aaaaGCGGUCUa--GGGUGGGgGCGCGC- -5'
3312 3' -59.6 NC_001545.1 + 6323 0.7 0.054484
Target:  5'- --gUgGCCGGGUggucgaggCCgCGCCCCCGCGUa -3'
miRNA:   3'- aaaAgCGGUCUA--------GG-GUGGGGGCGCGc -5'
3312 3' -59.6 NC_001545.1 + 9680 0.7 0.051057
Target:  5'- --cUCGCUAGugg--GCCCCCGCGCGa -3'
miRNA:   3'- aaaAGCGGUCuagggUGGGGGCGCGC- -5'
3312 3' -59.6 NC_001545.1 + 1694 0.74 0.024028
Target:  5'- ---cCGCCGGc-UCCACgCCCCGCGCGg -3'
miRNA:   3'- aaaaGCGGUCuaGGGUG-GGGGCGCGC- -5'
3312 3' -59.6 NC_001545.1 + 7393 0.74 0.023248
Target:  5'- ---gCGCCGGGcUCCAgCCCCGCGCu -3'
miRNA:   3'- aaaaGCGGUCUaGGGUgGGGGCGCGc -5'
3312 3' -59.6 NC_001545.1 + 5189 1.05 4.9e-05
Target:  5'- cUUUUCGCCAGAUCCCACCCCCGCGCGu -3'
miRNA:   3'- -AAAAGCGGUCUAGGGUGGGGGCGCGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.