miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33152 3' -53 NC_007497.1 + 26757 0.66 0.786872
Target:  5'- aUGgcgGCACGAccguCA-CCGGCCGcUGCu -3'
miRNA:   3'- gACa--CGUGCUuu--GUcGGUCGGCuACG- -5'
33152 3' -53 NC_007497.1 + 8681 0.66 0.785848
Target:  5'- gUGgGCugGcgucGACGGCCGGCggcuauuucaacgCGGUGCg -3'
miRNA:   3'- gACaCGugCu---UUGUCGGUCG-------------GCUACG- -5'
33152 3' -53 NC_007497.1 + 40429 0.66 0.76608
Target:  5'- --aUGCguaGCGAGAC-GCCGgaauaccuGCCGGUGCu -3'
miRNA:   3'- gacACG---UGCUUUGuCGGU--------CGGCUACG- -5'
33152 3' -53 NC_007497.1 + 13869 0.66 0.76608
Target:  5'- ---cGCACGGGAC-GCCgcaugGGCCGccGCa -3'
miRNA:   3'- gacaCGUGCUUUGuCGG-----UCGGCuaCG- -5'
33152 3' -53 NC_007497.1 + 13824 0.66 0.76608
Target:  5'- ---cGCACGGGAC-GCCgcaggGGCCGccGCa -3'
miRNA:   3'- gacaCGUGCUUUGuCGG-----UCGGCuaCG- -5'
33152 3' -53 NC_007497.1 + 13791 0.66 0.76608
Target:  5'- ---cGCACGGGAC-GCCgcaggGGCCGccGCa -3'
miRNA:   3'- gacaCGUGCUUUGuCGG-----UCGGCuaCG- -5'
33152 3' -53 NC_007497.1 + 40551 0.66 0.76608
Target:  5'- -cGUGaUGCucGGCGGCCAGgacaaaCCGAUGCu -3'
miRNA:   3'- gaCAC-GUGcuUUGUCGGUC------GGCUACG- -5'
33152 3' -53 NC_007497.1 + 9583 0.66 0.755455
Target:  5'- aCUGgaaCACGAAACGGUUggcacuuGCCGcgGCa -3'
miRNA:   3'- -GACac-GUGCUUUGUCGGu------CGGCuaCG- -5'
33152 3' -53 NC_007497.1 + 15242 0.66 0.755455
Target:  5'- cCUGUGgcgcauccCGCGGAc--GCCGGCCGA-GCg -3'
miRNA:   3'- -GACAC--------GUGCUUuguCGGUCGGCUaCG- -5'
33152 3' -53 NC_007497.1 + 35757 0.66 0.744695
Target:  5'- -gGUGCGCGGGcuGCGGUgcaGGCCGggGg -3'
miRNA:   3'- gaCACGUGCUU--UGUCGg--UCGGCuaCg -5'
33152 3' -53 NC_007497.1 + 23624 0.66 0.733812
Target:  5'- ---aGCACGcgGCcGCCGGCCGugacccacUGCg -3'
miRNA:   3'- gacaCGUGCuuUGuCGGUCGGCu-------ACG- -5'
33152 3' -53 NC_007497.1 + 40685 0.67 0.711729
Target:  5'- -gGUGCGCGAcGC-GCgGGCCGGa-- -3'
miRNA:   3'- gaCACGUGCUuUGuCGgUCGGCUacg -5'
33152 3' -53 NC_007497.1 + 19793 0.67 0.700554
Target:  5'- -gGUcGCAcCGAucAACAGCCAGaucagcgCGGUGCa -3'
miRNA:   3'- gaCA-CGU-GCU--UUGUCGGUCg------GCUACG- -5'
33152 3' -53 NC_007497.1 + 18276 0.67 0.699432
Target:  5'- gUGUGCGCGcgcagaacgugauGAACGugacgucgcuGCCGGCCGucaGCg -3'
miRNA:   3'- gACACGUGC-------------UUUGU----------CGGUCGGCua-CG- -5'
33152 3' -53 NC_007497.1 + 35578 0.67 0.689308
Target:  5'- ---cGCGCGAucgcguCGGCCAcGCCGG-GCa -3'
miRNA:   3'- gacaCGUGCUuu----GUCGGU-CGGCUaCG- -5'
33152 3' -53 NC_007497.1 + 4662 0.68 0.66665
Target:  5'- aUGgGCGCG-AACGGCgugaAGCCGcUGCg -3'
miRNA:   3'- gACaCGUGCuUUGUCGg---UCGGCuACG- -5'
33152 3' -53 NC_007497.1 + 28038 0.68 0.66665
Target:  5'- ---cGCACGcgcacCAGCCAGCCGGauuucGCa -3'
miRNA:   3'- gacaCGUGCuuu--GUCGGUCGGCUa----CG- -5'
33152 3' -53 NC_007497.1 + 34578 0.68 0.655263
Target:  5'- --cUGCGCG-GGCGGCC-GCCGuuUGCg -3'
miRNA:   3'- gacACGUGCuUUGUCGGuCGGCu-ACG- -5'
33152 3' -53 NC_007497.1 + 5791 0.68 0.655263
Target:  5'- -aGUGCcCGGAAgAGCUGGaagaCGGUGCc -3'
miRNA:   3'- gaCACGuGCUUUgUCGGUCg---GCUACG- -5'
33152 3' -53 NC_007497.1 + 21128 0.68 0.654123
Target:  5'- -cGUGCgcucaACGAggccgacAACGGCCGGCCGcaGUGg -3'
miRNA:   3'- gaCACG-----UGCU-------UUGUCGGUCGGC--UACg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.