miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33152 5' -55.4 NC_007497.1 + 16087 0.66 0.646879
Target:  5'- cAGCGCG-GCuCAGgGGgagCCCGUGCc- -3'
miRNA:   3'- uUUGCGCaCG-GUCgCUa--GGGCAUGuc -5'
33152 5' -55.4 NC_007497.1 + 4669 0.66 0.635616
Target:  5'- cGAACgGCGUgaaGCCGcugcGCGAUCCCGaaUACAc -3'
miRNA:   3'- -UUUG-CGCA---CGGU----CGCUAGGGC--AUGUc -5'
33152 5' -55.4 NC_007497.1 + 10197 0.66 0.620969
Target:  5'- ---aGCGUGCCgcggucgcgcaaacGGCGGccgCCCGcGCAGg -3'
miRNA:   3'- uuugCGCACGG--------------UCGCUa--GGGCaUGUC- -5'
33152 5' -55.4 NC_007497.1 + 31087 0.66 0.601846
Target:  5'- cGGCcCGUG-CGGCGAcccaugcggcgUCCCGUGCGGc -3'
miRNA:   3'- uUUGcGCACgGUCGCU-----------AGGGCAUGUC- -5'
33152 5' -55.4 NC_007497.1 + 30167 0.66 0.59063
Target:  5'- uGGCaCGUGCCGaCGAUCUggCGUGCGGg -3'
miRNA:   3'- uUUGcGCACGGUcGCUAGG--GCAUGUC- -5'
33152 5' -55.4 NC_007497.1 + 12296 0.66 0.59063
Target:  5'- gGAugGCGUcgcggccgccGCCGGCGGcaaCgCGUACGGg -3'
miRNA:   3'- -UUugCGCA----------CGGUCGCUa--GgGCAUGUC- -5'
33152 5' -55.4 NC_007497.1 + 42247 0.67 0.579452
Target:  5'- --cCGCGgccGCCGGCGcgcacgCCCGgGCAGa -3'
miRNA:   3'- uuuGCGCa--CGGUCGCua----GGGCaUGUC- -5'
33152 5' -55.4 NC_007497.1 + 42850 0.67 0.55724
Target:  5'- gAGAgGCaaauUGCCAGUGAUUcuuaCCGUGCAGc -3'
miRNA:   3'- -UUUgCGc---ACGGUCGCUAG----GGCAUGUC- -5'
33152 5' -55.4 NC_007497.1 + 14302 0.67 0.535278
Target:  5'- --cUGCGUcGCCAGCGAgcggCCCGcgGCu- -3'
miRNA:   3'- uuuGCGCA-CGGUCGCUa---GGGCa-UGuc -5'
33152 5' -55.4 NC_007497.1 + 20782 0.68 0.502938
Target:  5'- cGAGCGCGUGCUcGCGGUUCgG-ACGa -3'
miRNA:   3'- -UUUGCGCACGGuCGCUAGGgCaUGUc -5'
33152 5' -55.4 NC_007497.1 + 30961 0.69 0.451067
Target:  5'- --cUGCGgcgGCCccuGCGGcgUCCCGUGCGGc -3'
miRNA:   3'- uuuGCGCa--CGGu--CGCU--AGGGCAUGUC- -5'
33152 5' -55.4 NC_007497.1 + 11386 0.69 0.44005
Target:  5'- cGGACGCGgGCgGGCGGcgCCCGUuccgagccggaaaGCAGg -3'
miRNA:   3'- -UUUGCGCaCGgUCGCUa-GGGCA-------------UGUC- -5'
33152 5' -55.4 NC_007497.1 + 5518 0.69 0.421388
Target:  5'- --uCGCGUGCUGcGCGAUC-CGUACAc -3'
miRNA:   3'- uuuGCGCACGGU-CGCUAGgGCAUGUc -5'
33152 5' -55.4 NC_007497.1 + 14635 0.7 0.402269
Target:  5'- cGGCaCGUGCCAguggcgcuaccGCGGUCCCGagUGCGGa -3'
miRNA:   3'- uUUGcGCACGGU-----------CGCUAGGGC--AUGUC- -5'
33152 5' -55.4 NC_007497.1 + 17617 0.71 0.356955
Target:  5'- uGGACgGCGUGCUGGuCGGUCCgGgGCAGg -3'
miRNA:   3'- -UUUG-CGCACGGUC-GCUAGGgCaUGUC- -5'
33152 5' -55.4 NC_007497.1 + 30993 0.71 0.348334
Target:  5'- -cAUGCGgcgGCCccuGCGGcgUCCCGUGCGGc -3'
miRNA:   3'- uuUGCGCa--CGGu--CGCU--AGGGCAUGUC- -5'
33152 5' -55.4 NC_007497.1 + 29136 1.06 0.001159
Target:  5'- gAAACGCGUGCCAGCGAUCCCGUACAGc -3'
miRNA:   3'- -UUUGCGCACGGUCGCUAGGGCAUGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.