miRNA display CGI


Results 1 - 20 of 49 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33154 3' -57.7 NC_007497.1 + 8896 0.66 0.550716
Target:  5'- aGCaACCGGCUcaAGAUCgUCaC-GCGCGAUc -3'
miRNA:   3'- -CG-UGGCUGG--UCUAGgAG-GuCGCGCUG- -5'
33154 3' -57.7 NC_007497.1 + 18455 0.66 0.550716
Target:  5'- cGCACCGagaucugguacaGCCGGAcgCCgagCC-GCGaCGACg -3'
miRNA:   3'- -CGUGGC------------UGGUCUa-GGa--GGuCGC-GCUG- -5'
33154 3' -57.7 NC_007497.1 + 40577 0.66 0.550716
Target:  5'- cGCAUgGACCGGGaauaC-CCGGCGCG-Cg -3'
miRNA:   3'- -CGUGgCUGGUCUag--GaGGUCGCGCuG- -5'
33154 3' -57.7 NC_007497.1 + 24065 0.66 0.540016
Target:  5'- cGCACCcaGugCGGGUCCuuUCCGuUGCGAa -3'
miRNA:   3'- -CGUGG--CugGUCUAGG--AGGUcGCGCUg -5'
33154 3' -57.7 NC_007497.1 + 6081 0.66 0.540016
Target:  5'- cGCcguCCGAgCAG-UUCUCCGGCGaCGGa -3'
miRNA:   3'- -CGu--GGCUgGUCuAGGAGGUCGC-GCUg -5'
33154 3' -57.7 NC_007497.1 + 27174 0.66 0.540016
Target:  5'- cGgACCGACCAGcacgCCgUCCAuGC-CGACc -3'
miRNA:   3'- -CgUGGCUGGUCua--GG-AGGU-CGcGCUG- -5'
33154 3' -57.7 NC_007497.1 + 17682 0.66 0.540016
Target:  5'- cGCAUcggCGGCCGuAUCCgcuccgcugCCGGCGCGGu -3'
miRNA:   3'- -CGUG---GCUGGUcUAGGa--------GGUCGCGCUg -5'
33154 3' -57.7 NC_007497.1 + 16501 0.66 0.529388
Target:  5'- cCGCUGACguCGGAUgcgCCUUgGGUGCGGCa -3'
miRNA:   3'- cGUGGCUG--GUCUA---GGAGgUCGCGCUG- -5'
33154 3' -57.7 NC_007497.1 + 3687 0.66 0.529388
Target:  5'- gGCACCGgcgucACCGcGAagCggaUCAGCGCGGCg -3'
miRNA:   3'- -CGUGGC-----UGGU-CUagGa--GGUCGCGCUG- -5'
33154 3' -57.7 NC_007497.1 + 1710 0.66 0.529388
Target:  5'- aGCAcucCCGGCCgcacccagcggGGAUCaCU-CGGCGCGAUg -3'
miRNA:   3'- -CGU---GGCUGG-----------UCUAG-GAgGUCGCGCUG- -5'
33154 3' -57.7 NC_007497.1 + 35481 0.66 0.518837
Target:  5'- aGCGCCGGCau--UCCg-CAGCGCGuCg -3'
miRNA:   3'- -CGUGGCUGgucuAGGagGUCGCGCuG- -5'
33154 3' -57.7 NC_007497.1 + 3546 0.66 0.518837
Target:  5'- cGCGCUGACCA---CCggcUUGGCGCGGCu -3'
miRNA:   3'- -CGUGGCUGGUcuaGGa--GGUCGCGCUG- -5'
33154 3' -57.7 NC_007497.1 + 9095 0.66 0.497994
Target:  5'- gGCGCUGuCCGGcguaucggCCgacaCAGCGCGGCu -3'
miRNA:   3'- -CGUGGCuGGUCua------GGag--GUCGCGCUG- -5'
33154 3' -57.7 NC_007497.1 + 34205 0.67 0.487714
Target:  5'- aGUGCCG-CCuGAUCCUCguCAGUGaCGAUc -3'
miRNA:   3'- -CGUGGCuGGuCUAGGAG--GUCGC-GCUG- -5'
33154 3' -57.7 NC_007497.1 + 43065 0.67 0.487714
Target:  5'- cGCGCCGAgU-GAUCC-CCgcugGGUGCGGCc -3'
miRNA:   3'- -CGUGGCUgGuCUAGGaGG----UCGCGCUG- -5'
33154 3' -57.7 NC_007497.1 + 6919 0.67 0.487714
Target:  5'- -uGCCGAuCCcGGUCgC-CCAGgGCGACa -3'
miRNA:   3'- cgUGGCU-GGuCUAG-GaGGUCgCGCUG- -5'
33154 3' -57.7 NC_007497.1 + 19796 0.67 0.467461
Target:  5'- cGCACCGAUCAacagCCagaUCAGCGCGGu -3'
miRNA:   3'- -CGUGGCUGGUcua-GGa--GGUCGCGCUg -5'
33154 3' -57.7 NC_007497.1 + 36799 0.67 0.467461
Target:  5'- cGgAUCGAgCCAGAacgcgcggUCCUCgAGCaGCGGCu -3'
miRNA:   3'- -CgUGGCU-GGUCU--------AGGAGgUCG-CGCUG- -5'
33154 3' -57.7 NC_007497.1 + 42949 0.67 0.467461
Target:  5'- aUACCGGCCGGGUcgacgccggCCUuguauagaagcCCAGCGCG-Cu -3'
miRNA:   3'- cGUGGCUGGUCUA---------GGA-----------GGUCGCGCuG- -5'
33154 3' -57.7 NC_007497.1 + 28002 0.67 0.46646
Target:  5'- gGCGCUGAUgCGGGcugcucgUCCgCCGGCGCGGg -3'
miRNA:   3'- -CGUGGCUG-GUCU-------AGGaGGUCGCGCUg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.