miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33270 5' -53.3 NC_007605.1 + 5460 1.13 0.00312
Target:  5'- uCGCCGGGAUGCUAAUGUUCAGCCAGCg -3'
miRNA:   3'- -GCGGCCCUACGAUUACAAGUCGGUCG- -5'
33270 5' -53.3 NC_007605.1 + 2793 0.76 0.551527
Target:  5'- gGCCGGGGUGCUGGcgucucauaaacagcUGUgggCAGUUGGCc -3'
miRNA:   3'- gCGGCCCUACGAUU---------------ACAa--GUCGGUCG- -5'
33270 5' -53.3 NC_007605.1 + 76253 0.75 0.62988
Target:  5'- uGaCCGGGGUGCUGc----CGGCCGGCg -3'
miRNA:   3'- gC-GGCCCUACGAUuacaaGUCGGUCG- -5'
33270 5' -53.3 NC_007605.1 + 75725 0.73 0.691951
Target:  5'- gCGCCGGGGUGg-GGUGgacgUCAGCCuGa -3'
miRNA:   3'- -GCGGCCCUACgaUUACa---AGUCGGuCg -5'
33270 5' -53.3 NC_007605.1 + 53688 0.72 0.780922
Target:  5'- aGCCGcaGcgGCUAG-GUUCAGCCAGg -3'
miRNA:   3'- gCGGCc-CuaCGAUUaCAAGUCGGUCg -5'
33270 5' -53.3 NC_007605.1 + 57476 0.71 0.808449
Target:  5'- aGCCGGGGcgGCUGAUGgcgUgGGCUgcuGCu -3'
miRNA:   3'- gCGGCCCUa-CGAUUACa--AgUCGGu--CG- -5'
33270 5' -53.3 NC_007605.1 + 66247 0.71 0.808449
Target:  5'- cCGCCgaucugGGGGUGauggAGUGUaaGGCCAGCg -3'
miRNA:   3'- -GCGG------CCCUACga--UUACAagUCGGUCG- -5'
33270 5' -53.3 NC_007605.1 + 63632 0.71 0.825991
Target:  5'- uCGUCGGGggGCUGGgccugCAGCCGuGCc -3'
miRNA:   3'- -GCGGCCCuaCGAUUacaa-GUCGGU-CG- -5'
33270 5' -53.3 NC_007605.1 + 40491 0.7 0.874017
Target:  5'- cCGCCGGGcccCUGGUGgcUCGGCC-GCg -3'
miRNA:   3'- -GCGGCCCuacGAUUACa-AGUCGGuCG- -5'
33270 5' -53.3 NC_007605.1 + 57374 0.69 0.888308
Target:  5'- aGCCGGGGUaGCUGAUGgcaggGGCUgcuGCu -3'
miRNA:   3'- gCGGCCCUA-CGAUUACaag--UCGGu--CG- -5'
33270 5' -53.3 NC_007605.1 + 62341 0.69 0.894437
Target:  5'- gGCCGuGGA-GCUGGUGgagCAcagugggggcgggGCCGGCg -3'
miRNA:   3'- gCGGC-CCUaCGAUUACaa-GU-------------CGGUCG- -5'
33270 5' -53.3 NC_007605.1 + 127282 0.69 0.895106
Target:  5'- uGCCGuGAUGCUcaAGUGUaagCAGCCcggGGCc -3'
miRNA:   3'- gCGGCcCUACGA--UUACAa--GUCGG---UCG- -5'
33270 5' -53.3 NC_007605.1 + 63095 0.69 0.895106
Target:  5'- uCGCCGGGGgugGC-AGUGgaggggggagcUUCAGCUGGUc -3'
miRNA:   3'- -GCGGCCCUa--CGaUUAC-----------AAGUCGGUCG- -5'
33270 5' -53.3 NC_007605.1 + 154828 0.69 0.90799
Target:  5'- gGCCGGuGAUGCggaccuUGGUGUU-GGCCcGCa -3'
miRNA:   3'- gCGGCC-CUACG------AUUACAAgUCGGuCG- -5'
33270 5' -53.3 NC_007605.1 + 64582 0.69 0.90799
Target:  5'- uGCCGGGGUGgaAAacuccacUCuGGCCAGCu -3'
miRNA:   3'- gCGGCCCUACgaUUaca----AG-UCGGUCG- -5'
33270 5' -53.3 NC_007605.1 + 38769 0.69 0.913472
Target:  5'- aGCCGGGGUuccuggcGCUccggGggCAGCCGGg -3'
miRNA:   3'- gCGGCCCUA-------CGAuua-CaaGUCGGUCg -5'
33270 5' -53.3 NC_007605.1 + 38644 0.69 0.913472
Target:  5'- aGCCGGGGUuccuggcGCUccggGggCAGCCGGg -3'
miRNA:   3'- gCGGCCCUA-------CGAuua-CaaGUCGGUCg -5'
33270 5' -53.3 NC_007605.1 + 38519 0.69 0.913472
Target:  5'- aGCCGGGGUuccuggcGCUccggGggCAGCCGGg -3'
miRNA:   3'- gCGGCCCUA-------CGAuua-CaaGUCGGUCg -5'
33270 5' -53.3 NC_007605.1 + 38394 0.69 0.913472
Target:  5'- aGCCGGGGUuccuggcGCUccggGggCAGCCGGg -3'
miRNA:   3'- gCGGCCCUA-------CGAuua-CaaGUCGGUCg -5'
33270 5' -53.3 NC_007605.1 + 39643 0.69 0.913472
Target:  5'- aGCCGGGGUuccuggcGCUccggGggCAGCCGGg -3'
miRNA:   3'- gCGGCCCUA-------CGAuua-CaaGUCGGUCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.