miRNA display CGI


Results 1 - 20 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33294 3' -60.5 NC_007605.1 + 164820 0.66 0.779789
Target:  5'- aCCCGGGAUgagaaagaccugccuUuGCCaGCCCUgGUC-CUCu -3'
miRNA:   3'- -GGGCCCUA---------------AcCGG-CGGGGgUAGuGAG- -5'
33294 3' -60.5 NC_007605.1 + 36334 0.66 0.776223
Target:  5'- uUgGGGAaaacacggGGgUGCCCCCAcCACUCc -3'
miRNA:   3'- gGgCCCUaa------CCgGCGGGGGUaGUGAG- -5'
33294 3' -60.5 NC_007605.1 + 40006 0.66 0.767228
Target:  5'- gCUGGGGUccaggGGaccaCGCCCCCAcccugCAUUCc -3'
miRNA:   3'- gGGCCCUAa----CCg---GCGGGGGUa----GUGAG- -5'
33294 3' -60.5 NC_007605.1 + 32226 0.66 0.767228
Target:  5'- cCCCGaGGGUgaGGCCcagcccccucccGCCCCUGUcCACUg -3'
miRNA:   3'- -GGGC-CCUAa-CCGG------------CGGGGGUA-GUGAg -5'
33294 3' -60.5 NC_007605.1 + 91936 0.66 0.767228
Target:  5'- cCUCGGuguGAgaGGCa-CCCCCAUCAUUCc -3'
miRNA:   3'- -GGGCC---CUaaCCGgcGGGGGUAGUGAG- -5'
33294 3' -60.5 NC_007605.1 + 23019 0.66 0.767228
Target:  5'- cCCCGaGGGUgaGGCCcagcccccucccGCCCCUGUcCACUg -3'
miRNA:   3'- -GGGC-CCUAa-CCGG------------CGGGGGUA-GUGAg -5'
33294 3' -60.5 NC_007605.1 + 26088 0.66 0.767228
Target:  5'- cCCCGaGGGUgaGGCCcagcccccucccGCCCCUGUcCACUg -3'
miRNA:   3'- -GGGC-CCUAa-CCGG------------CGGGGGUA-GUGAg -5'
33294 3' -60.5 NC_007605.1 + 29157 0.66 0.767228
Target:  5'- cCCCGaGGGUgaGGCCcagcccccucccGCCCCUGUcCACUg -3'
miRNA:   3'- -GGGC-CCUAa-CCGG------------CGGGGGUA-GUGAg -5'
33294 3' -60.5 NC_007605.1 + 38734 0.66 0.767228
Target:  5'- aCCGGcGGccgcccGGCUGCCCCCGgagCGC-Ca -3'
miRNA:   3'- gGGCC-CUaa----CCGGCGGGGGUa--GUGaG- -5'
33294 3' -60.5 NC_007605.1 + 38984 0.66 0.767228
Target:  5'- aCCGGcGGccgcccGGCUGCCCCCGgagCGC-Ca -3'
miRNA:   3'- gGGCC-CUaa----CCGGCGGGGGUa--GUGaG- -5'
33294 3' -60.5 NC_007605.1 + 16882 0.66 0.767228
Target:  5'- cCCCGaGGGUgaGGCCcagcccccucccGCCCCUGUcCACUg -3'
miRNA:   3'- -GGGC-CCUAa-CCGG------------CGGGGGUA-GUGAg -5'
33294 3' -60.5 NC_007605.1 + 13813 0.66 0.767228
Target:  5'- cCCCGaGGGUgaGGCCcagcccccucccGCCCCUGUcCACUg -3'
miRNA:   3'- -GGGC-CCUAa-CCGG------------CGGGGGUA-GUGAg -5'
33294 3' -60.5 NC_007605.1 + 39233 0.66 0.767228
Target:  5'- aCCGGcGGccgcccGGCUGCCCCCGgagCGC-Ca -3'
miRNA:   3'- gGGCC-CUaa----CCGGCGGGGGUa--GUGaG- -5'
33294 3' -60.5 NC_007605.1 + 39358 0.66 0.767228
Target:  5'- aCCGGcGGccgcccGGCUGCCCCCGgagCGC-Ca -3'
miRNA:   3'- gGGCC-CUaa----CCGGCGGGGGUa--GUGaG- -5'
33294 3' -60.5 NC_007605.1 + 39733 0.66 0.767228
Target:  5'- aCCGGcGGccgcccGGCUGCCCCCGgagCGC-Ca -3'
miRNA:   3'- gGGCC-CUaa----CCGGCGGGGGUa--GUGaG- -5'
33294 3' -60.5 NC_007605.1 + 39858 0.66 0.767228
Target:  5'- aCCGGcGGccgcccGGCUGCCCCCGgagCGC-Ca -3'
miRNA:   3'- gGGCC-CUaa----CCGGCGGGGGUa--GUGaG- -5'
33294 3' -60.5 NC_007605.1 + 39608 0.66 0.767228
Target:  5'- aCCGGcGGccgcccGGCUGCCCCCGgagCGC-Ca -3'
miRNA:   3'- gGGCC-CUaa----CCGGCGGGGGUa--GUGaG- -5'
33294 3' -60.5 NC_007605.1 + 38609 0.66 0.767228
Target:  5'- aCCGGcGGccgcccGGCUGCCCCCGgagCGC-Ca -3'
miRNA:   3'- gGGCC-CUaa----CCGGCGGGGGUa--GUGaG- -5'
33294 3' -60.5 NC_007605.1 + 38484 0.66 0.767228
Target:  5'- aCCGGcGGccgcccGGCUGCCCCCGgagCGC-Ca -3'
miRNA:   3'- gGGCC-CUaa----CCGGCGGGGGUa--GUGaG- -5'
33294 3' -60.5 NC_007605.1 + 39483 0.66 0.767228
Target:  5'- aCCGGcGGccgcccGGCUGCCCCCGgagCGC-Ca -3'
miRNA:   3'- gGGCC-CUaa----CCGGCGGGGGUa--GUGaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.