miRNA display CGI


Results 1 - 20 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33345 5' -63.3 NC_007605.1 + 141512 0.66 0.60394
Target:  5'- -aGGGCcggAACCCCGGacccGGCUGCaGCCg- -3'
miRNA:   3'- caCCCG---UUGGGGUC----CCGGCGcUGGau -5'
33345 5' -63.3 NC_007605.1 + 141410 0.66 0.60394
Target:  5'- -aGGGCcggAACCCCGGacccGGCUGCaGCCg- -3'
miRNA:   3'- caCCCG---UUGGGGUC----CCGGCGcUGGau -5'
33345 5' -63.3 NC_007605.1 + 143244 0.66 0.60394
Target:  5'- -aGGGCcggAACCCCGGacccGGCUGCaGCCg- -3'
miRNA:   3'- caCCCG---UUGGGGUC----CCGGCGcUGGau -5'
33345 5' -63.3 NC_007605.1 + 142633 0.66 0.60394
Target:  5'- -aGGGCcggAACCCCGGacccGGCUGCaGCCg- -3'
miRNA:   3'- caCCCG---UUGGGGUC----CCGGCGcUGGau -5'
33345 5' -63.3 NC_007605.1 + 142429 0.66 0.60394
Target:  5'- -aGGGCcggAACCCCGGacccGGCUGCaGCCg- -3'
miRNA:   3'- caCCCG---UUGGGGUC----CCGGCGcUGGau -5'
33345 5' -63.3 NC_007605.1 + 141002 0.66 0.60394
Target:  5'- -aGGGCcggAACCCCGGacccGGCUGCaGCCg- -3'
miRNA:   3'- caCCCG---UUGGGGUC----CCGGCGcUGGau -5'
33345 5' -63.3 NC_007605.1 + 142123 0.66 0.60394
Target:  5'- -aGGGCcggAACCCCGGacccGGCUGCaGCCg- -3'
miRNA:   3'- caCCCG---UUGGGGUC----CCGGCGcUGGau -5'
33345 5' -63.3 NC_007605.1 + 141614 0.66 0.60394
Target:  5'- -aGGGCcggAACCCCGGacccGGCUGCaGCCg- -3'
miRNA:   3'- caCCCG---UUGGGGUC----CCGGCGcUGGau -5'
33345 5' -63.3 NC_007605.1 + 142938 0.66 0.60394
Target:  5'- -aGGGCcggAACCCCGGacccGGCUGCaGCCg- -3'
miRNA:   3'- caCCCG---UUGGGGUC----CCGGCGcUGGau -5'
33345 5' -63.3 NC_007605.1 + 141308 0.66 0.60394
Target:  5'- -aGGGCcggAACCCCGGacccGGCUGCaGCCg- -3'
miRNA:   3'- caCCCG---UUGGGGUC----CCGGCGcUGGau -5'
33345 5' -63.3 NC_007605.1 + 142327 0.66 0.60394
Target:  5'- -aGGGCcggAACCCCGGacccGGCUGCaGCCg- -3'
miRNA:   3'- caCCCG---UUGGGGUC----CCGGCGcUGGau -5'
33345 5' -63.3 NC_007605.1 + 141919 0.66 0.60394
Target:  5'- -aGGGCcggAACCCCGGacccGGCUGCaGCCg- -3'
miRNA:   3'- caCCCG---UUGGGGUC----CCGGCGcUGGau -5'
33345 5' -63.3 NC_007605.1 + 142837 0.66 0.60394
Target:  5'- -aGGGCcggAACCCCGGacccGGCUGCaGCCg- -3'
miRNA:   3'- caCCCG---UUGGGGUC----CCGGCGcUGGau -5'
33345 5' -63.3 NC_007605.1 + 141716 0.66 0.60394
Target:  5'- -aGGGCcggAACCCCGGacccGGCUGCaGCCg- -3'
miRNA:   3'- caCCCG---UUGGGGUC----CCGGCGcUGGau -5'
33345 5' -63.3 NC_007605.1 + 143040 0.66 0.60394
Target:  5'- -aGGGCcggAACCCCGGacccGGCUGCaGCCg- -3'
miRNA:   3'- caCCCG---UUGGGGUC----CCGGCGcUGGau -5'
33345 5' -63.3 NC_007605.1 + 142531 0.66 0.60394
Target:  5'- -aGGGCcggAACCCCGGacccGGCUGCaGCCg- -3'
miRNA:   3'- caCCCG---UUGGGGUC----CCGGCGcUGGau -5'
33345 5' -63.3 NC_007605.1 + 141818 0.66 0.60394
Target:  5'- -aGGGCcggAACCCCGGacccGGCUGCaGCCg- -3'
miRNA:   3'- caCCCG---UUGGGGUC----CCGGCGcUGGau -5'
33345 5' -63.3 NC_007605.1 + 143142 0.66 0.60394
Target:  5'- -aGGGCcggAACCCCGGacccGGCUGCaGCCg- -3'
miRNA:   3'- caCCCG---UUGGGGUC----CCGGCGcUGGau -5'
33345 5' -63.3 NC_007605.1 + 142735 0.66 0.60394
Target:  5'- -aGGGCcggAACCCCGGacccGGCUGCaGCCg- -3'
miRNA:   3'- caCCCG---UUGGGGUC----CCGGCGcUGGau -5'
33345 5' -63.3 NC_007605.1 + 142021 0.66 0.60394
Target:  5'- -aGGGCcggAACCCCGGacccGGCUGCaGCCg- -3'
miRNA:   3'- caCCCG---UUGGGGUC----CCGGCGcUGGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.