miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33369 3' -47.3 NC_007605.1 + 39791 0.66 0.999494
Target:  5'- uGCACCUGGaauGCagGGUGGggGCGu -3'
miRNA:   3'- -UGUGGACCac-UGa-UCACCa-CGC- -5'
33369 3' -47.3 NC_007605.1 + 66409 0.66 0.999494
Target:  5'- -gACCaGGUGGgUGGUGuGUGCc -3'
miRNA:   3'- ugUGGaCCACUgAUCAC-CACGc -5'
33369 3' -47.3 NC_007605.1 + 36657 0.66 0.999494
Target:  5'- uGCGCUgaggUGGUGGg-GGUGGUGgGg -3'
miRNA:   3'- -UGUGG----ACCACUgaUCACCACgC- -5'
33369 3' -47.3 NC_007605.1 + 139815 0.66 0.999365
Target:  5'- uAUGCCUGGUGuccccUUAGUGGgacGCa -3'
miRNA:   3'- -UGUGGACCACu----GAUCACCa--CGc -5'
33369 3' -47.3 NC_007605.1 + 118247 0.66 0.999209
Target:  5'- aGCACUggUGGUGGaggaggacCUGGUGGUGaCa -3'
miRNA:   3'- -UGUGG--ACCACU--------GAUCACCAC-Gc -5'
33369 3' -47.3 NC_007605.1 + 37254 0.67 0.999022
Target:  5'- ---gCUGGUGcuGCUGGUGGUGgCa -3'
miRNA:   3'- ugugGACCAC--UGAUCACCAC-Gc -5'
33369 3' -47.3 NC_007605.1 + 108460 0.67 0.999022
Target:  5'- -gGCC-GGUGGCUGuGgacuggGGUGCGg -3'
miRNA:   3'- ugUGGaCCACUGAU-Ca-----CCACGC- -5'
33369 3' -47.3 NC_007605.1 + 137371 0.67 0.998892
Target:  5'- uGCACCaguuucuuuccgcggUGGUGGCccucGGUGGUGgGc -3'
miRNA:   3'- -UGUGG---------------ACCACUGa---UCACCACgC- -5'
33369 3' -47.3 NC_007605.1 + 108869 0.67 0.998798
Target:  5'- aGCACCUGGUaGAagUAGUuGUGCc -3'
miRNA:   3'- -UGUGGACCA-CUg-AUCAcCACGc -5'
33369 3' -47.3 NC_007605.1 + 78207 0.67 0.998531
Target:  5'- cACugCUGGgguggGGCUGGUGGcauuUGgGg -3'
miRNA:   3'- -UGugGACCa----CUGAUCACC----ACgC- -5'
33369 3' -47.3 NC_007605.1 + 78165 0.67 0.998531
Target:  5'- cACugCUGGgguggGGCUGGUGGcauuUGgGg -3'
miRNA:   3'- -UGugGACCa----CUGAUCACC----ACgC- -5'
33369 3' -47.3 NC_007605.1 + 30174 0.67 0.998216
Target:  5'- -uGCCUGG-GugUGGUGGaGUGu -3'
miRNA:   3'- ugUGGACCaCugAUCACCaCGC- -5'
33369 3' -47.3 NC_007605.1 + 137570 0.67 0.998216
Target:  5'- -gGCCU-GUGACUGgugcuuGUGGUGUGg -3'
miRNA:   3'- ugUGGAcCACUGAU------CACCACGC- -5'
33369 3' -47.3 NC_007605.1 + 33243 0.67 0.998216
Target:  5'- -uGCCUGG-GugUGGUGGaGUGu -3'
miRNA:   3'- ugUGGACCaCugAUCACCaCGC- -5'
33369 3' -47.3 NC_007605.1 + 24037 0.67 0.998216
Target:  5'- -uGCCUGG-GugUGGUGGaGUGu -3'
miRNA:   3'- ugUGGACCaCugAUCACCaCGC- -5'
33369 3' -47.3 NC_007605.1 + 20968 0.67 0.998216
Target:  5'- -uGCCUGG-GugUGGUGGaGUGu -3'
miRNA:   3'- ugUGGACCaCugAUCACCaCGC- -5'
33369 3' -47.3 NC_007605.1 + 14830 0.67 0.998216
Target:  5'- -uGCCUGG-GugUGGUGGaGUGu -3'
miRNA:   3'- ugUGGACCaCugAUCACCaCGC- -5'
33369 3' -47.3 NC_007605.1 + 27106 0.67 0.998216
Target:  5'- -uGCCUGG-GugUGGUGGaGUGu -3'
miRNA:   3'- ugUGGACCaCugAUCACCaCGC- -5'
33369 3' -47.3 NC_007605.1 + 17899 0.67 0.998216
Target:  5'- -uGCCUGG-GugUGGUGGaGUGu -3'
miRNA:   3'- ugUGGACCaCugAUCACCaCGC- -5'
33369 3' -47.3 NC_007605.1 + 37044 0.67 0.997845
Target:  5'- gUACC--GUGAgUAGUGGUGUGg -3'
miRNA:   3'- uGUGGacCACUgAUCACCACGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.