miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33370 5' -48.3 NC_007605.1 + 33923 0.66 0.997911
Target:  5'- gGGCugGCCGGCccGgGUCugggAGGUCu -3'
miRNA:   3'- -UCGugUGGUCGu-CgUAG----UCCAG- -5'
33370 5' -48.3 NC_007605.1 + 5146 0.66 0.997911
Target:  5'- uGGCugGCCuGGgGGCcGUgGGGUCa -3'
miRNA:   3'- -UCGugUGG-UCgUCG-UAgUCCAG- -5'
33370 5' -48.3 NC_007605.1 + 95136 0.66 0.997911
Target:  5'- cGCuuCcCCAGCGGCcucCAGGUCc -3'
miRNA:   3'- uCGu-GuGGUCGUCGua-GUCCAG- -5'
33370 5' -48.3 NC_007605.1 + 105802 0.66 0.997911
Target:  5'- gGGCACAgCCuGaggugGGCAUCAGGg- -3'
miRNA:   3'- -UCGUGU-GGuCg----UCGUAGUCCag -5'
33370 5' -48.3 NC_007605.1 + 131209 0.66 0.997485
Target:  5'- aAGCugGCUccggAGCAGCAUUAGa-- -3'
miRNA:   3'- -UCGugUGG----UCGUCGUAGUCcag -5'
33370 5' -48.3 NC_007605.1 + 165920 0.66 0.997485
Target:  5'- cAGuCGCugCuGCAGCuAUgGGGUCc -3'
miRNA:   3'- -UC-GUGugGuCGUCG-UAgUCCAG- -5'
33370 5' -48.3 NC_007605.1 + 157042 0.66 0.997485
Target:  5'- gGGgGCGCgAGUAGCA-CAuGGUCu -3'
miRNA:   3'- -UCgUGUGgUCGUCGUaGU-CCAG- -5'
33370 5' -48.3 NC_007605.1 + 106429 0.66 0.997196
Target:  5'- cGGCGCACagguuGGCGGCGuucauggccucgcccUgCAGGUCg -3'
miRNA:   3'- -UCGUGUGg----UCGUCGU---------------A-GUCCAG- -5'
33370 5' -48.3 NC_007605.1 + 107354 0.66 0.996988
Target:  5'- uGCGCGaaAGCAGagacUCGGGUCu -3'
miRNA:   3'- uCGUGUggUCGUCgu--AGUCCAG- -5'
33370 5' -48.3 NC_007605.1 + 7094 0.66 0.996988
Target:  5'- gAGCugGCCuGCAGgacagccgaCAUCGGGg- -3'
miRNA:   3'- -UCGugUGGuCGUC---------GUAGUCCag -5'
33370 5' -48.3 NC_007605.1 + 154145 0.66 0.996988
Target:  5'- aGGC-CGCCAGCAGCuUCuugauGGcCu -3'
miRNA:   3'- -UCGuGUGGUCGUCGuAGu----CCaG- -5'
33370 5' -48.3 NC_007605.1 + 170926 0.66 0.996988
Target:  5'- gAGgACgaaaGCCAGUAGCAgCAGcGUCa -3'
miRNA:   3'- -UCgUG----UGGUCGUCGUaGUC-CAG- -5'
33370 5' -48.3 NC_007605.1 + 144628 0.66 0.996988
Target:  5'- uGCACACCuGCAcaccuguugGUAUUGGGUUu -3'
miRNA:   3'- uCGUGUGGuCGU---------CGUAGUCCAG- -5'
33370 5' -48.3 NC_007605.1 + 101178 0.66 0.996413
Target:  5'- aAGUGCAUCAuGCAGCcgacuuGUCAGGg- -3'
miRNA:   3'- -UCGUGUGGU-CGUCG------UAGUCCag -5'
33370 5' -48.3 NC_007605.1 + 53765 0.66 0.996413
Target:  5'- uAGCGCaACCAGCAcGuCGUCagagAGGUUg -3'
miRNA:   3'- -UCGUG-UGGUCGU-C-GUAG----UCCAG- -5'
33370 5' -48.3 NC_007605.1 + 138982 0.66 0.996413
Target:  5'- cAGCGCACCAcUAGuCAcCAGGUg -3'
miRNA:   3'- -UCGUGUGGUcGUC-GUaGUCCAg -5'
33370 5' -48.3 NC_007605.1 + 160727 0.66 0.996413
Target:  5'- cGC-CGCCAGCAGCcccgacAUCgccgccccagGGGUCu -3'
miRNA:   3'- uCGuGUGGUCGUCG------UAG----------UCCAG- -5'
33370 5' -48.3 NC_007605.1 + 115471 0.66 0.996413
Target:  5'- uGCGCAgguguaCGGCGGaCAUCAGGg- -3'
miRNA:   3'- uCGUGUg-----GUCGUC-GUAGUCCag -5'
33370 5' -48.3 NC_007605.1 + 162537 0.67 0.994992
Target:  5'- cAGcCGCuCCAGCAGguUCuGGUUc -3'
miRNA:   3'- -UC-GUGuGGUCGUCguAGuCCAG- -5'
33370 5' -48.3 NC_007605.1 + 93287 0.67 0.994992
Target:  5'- cAGCccaACACCAGCcGGCAcaacgUCAGG-Cg -3'
miRNA:   3'- -UCG---UGUGGUCG-UCGU-----AGUCCaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.