miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33376 3' -47.4 NC_007605.1 + 2651 0.67 0.99825
Target:  5'- aUCgcuGGGCUGGUacuaccagaccgccaCCGG-CCCCGg -3'
miRNA:   3'- -AGau-UCCGAUCA---------------GGCUaGGGGC- -5'
33376 3' -47.4 NC_007605.1 + 12016 0.7 0.98892
Target:  5'- cUCUAAGGCccucgGGUCCcccuGGaCCCCGg -3'
miRNA:   3'- -AGAUUCCGa----UCAGG----CUaGGGGC- -5'
33376 3' -47.4 NC_007605.1 + 12225 0.66 0.999155
Target:  5'- gCUGAGGCcggGGUCCaGGgggaCCCGa -3'
miRNA:   3'- aGAUUCCGa--UCAGG-CUag--GGGC- -5'
33376 3' -47.4 NC_007605.1 + 12433 0.66 0.999455
Target:  5'- gUCggcuGGGCUGG-CCGAg-CCCGg -3'
miRNA:   3'- -AGau--UCCGAUCaGGCUagGGGC- -5'
33376 3' -47.4 NC_007605.1 + 12827 0.66 0.999658
Target:  5'- gUCUGggGGGCUGagggcgaccGUCCGggCCCgGa -3'
miRNA:   3'- -AGAU--UCCGAU---------CAGGCuaGGGgC- -5'
33376 3' -47.4 NC_007605.1 + 13131 0.68 0.996697
Target:  5'- cUCUGGGGcCUGGgccCCGAggguggcUCCCCu -3'
miRNA:   3'- -AGAUUCC-GAUCa--GGCU-------AGGGGc -5'
33376 3' -47.4 NC_007605.1 + 15085 0.7 0.98892
Target:  5'- cUCUAAGGCccucgGGUCCcccuGGaCCCCGg -3'
miRNA:   3'- -AGAUUCCGa----UCAGG----CUaGGGGC- -5'
33376 3' -47.4 NC_007605.1 + 15294 0.66 0.999155
Target:  5'- gCUGAGGCcggGGUCCaGGgggaCCCGa -3'
miRNA:   3'- aGAUUCCGa--UCAGG-CUag--GGGC- -5'
33376 3' -47.4 NC_007605.1 + 15502 0.66 0.999455
Target:  5'- gUCggcuGGGCUGG-CCGAg-CCCGg -3'
miRNA:   3'- -AGau--UCCGAUCaGGCUagGGGC- -5'
33376 3' -47.4 NC_007605.1 + 15896 0.66 0.999658
Target:  5'- gUCUGggGGGCUGagggcgaccGUCCGggCCCgGa -3'
miRNA:   3'- -AGAU--UCCGAU---------CAGGCuaGGGgC- -5'
33376 3' -47.4 NC_007605.1 + 16199 0.68 0.996697
Target:  5'- cUCUGGGGcCUGGgccCCGAggguggcUCCCCu -3'
miRNA:   3'- -AGAUUCC-GAUCa--GGCU-------AGGGGc -5'
33376 3' -47.4 NC_007605.1 + 17961 0.7 0.986305
Target:  5'- cCUGGGGCUAGUCUGGgugggauuaggcugCCUCa -3'
miRNA:   3'- aGAUUCCGAUCAGGCUa-------------GGGGc -5'
33376 3' -47.4 NC_007605.1 + 18154 0.7 0.98892
Target:  5'- cUCUAAGGCccucgGGUCCcccuGGaCCCCGg -3'
miRNA:   3'- -AGAUUCCGa----UCAGG----CUaGGGGC- -5'
33376 3' -47.4 NC_007605.1 + 18363 0.66 0.999155
Target:  5'- gCUGAGGCcggGGUCCaGGgggaCCCGa -3'
miRNA:   3'- aGAUUCCGa--UCAGG-CUag--GGGC- -5'
33376 3' -47.4 NC_007605.1 + 18571 0.66 0.999455
Target:  5'- gUCggcuGGGCUGG-CCGAg-CCCGg -3'
miRNA:   3'- -AGau--UCCGAUCaGGCUagGGGC- -5'
33376 3' -47.4 NC_007605.1 + 18965 0.66 0.999658
Target:  5'- gUCUGggGGGCUGagggcgaccGUCCGggCCCgGa -3'
miRNA:   3'- -AGAU--UCCGAU---------CAGGCuaGGGgC- -5'
33376 3' -47.4 NC_007605.1 + 19268 0.68 0.996697
Target:  5'- cUCUGGGGcCUGGgccCCGAggguggcUCCCCu -3'
miRNA:   3'- -AGAUUCC-GAUCa--GGCU-------AGGGGc -5'
33376 3' -47.4 NC_007605.1 + 21223 0.7 0.98892
Target:  5'- cUCUAAGGCccucgGGUCCcccuGGaCCCCGg -3'
miRNA:   3'- -AGAUUCCGa----UCAGG----CUaGGGGC- -5'
33376 3' -47.4 NC_007605.1 + 21432 0.66 0.999155
Target:  5'- gCUGAGGCcggGGUCCaGGgggaCCCGa -3'
miRNA:   3'- aGAUUCCGa--UCAGG-CUag--GGGC- -5'
33376 3' -47.4 NC_007605.1 + 21640 0.66 0.999455
Target:  5'- gUCggcuGGGCUGG-CCGAg-CCCGg -3'
miRNA:   3'- -AGau--UCCGAUCaGGCUagGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.