miRNA: 3'- cGGGAGaCCUCUuuCAGUUc---------CGGCCG- -5'
miRNA: 3'- cGGGAGa-------CCUCUUUCAGUUcCGgCCG- -5'
miRNA: 3'- -CGGGa---GAC---CUCU-----------UUCAGUUCCGGC-CG- -5'
miRNA: 3'- -CGGGAGACCUCUUUCAGUUCCGGCCG- -5'
Results 1 - 4 of 4 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 33691 | 5' | -55.2 | NC_011452.1 | + | 5666 | 0.66 | 0.216221 |
|
Target: 5'- aCCCUCaGGAGGuuGUCGAcaaacccacuGUCGGCu -3' miRNA: 3'- cGGGAGaCCUCUuuCAGUUc---------CGGCCG- -5' |
|||||||
| 33691 | 5' | -55.2 | NC_011452.1 | + | 6648 | 0.69 | 0.130674 |
|
Target: 5'- cCCCUCagugugagGGGGAGGGUCGAuGUgGGCc -3' miRNA: 3'- cGGGAGa-------CCUCUUUCAGUUcCGgCCG- -5' |
|||||||
| 33691 | 5' | -55.2 | NC_011452.1 | + | 3183 | 0.69 | 0.111113 |
|
Target: 5'- aGCCCagcgCUGaccGAGAcaagcaccgccGAGUCAGGGUCGuGCg -3' miRNA: 3'- -CGGGa---GAC---CUCU-----------UUCAGUUCCGGC-CG- -5' |
|||||||
| 33691 | 5' | -55.2 | NC_011452.1 | + | 7139 | 1.15 | 0.000021 |
|
Target: 5'- cGCCCUCUGGAGAAAGUCAAGGCCGGCa -3' miRNA: 3'- -CGGGAGACCUCUUUCAGUUCCGGCCG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home