miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3452 5' -55.2 NC_001604.1 + 28833 0.66 0.609939
Target:  5'- uGguGCgCAUGauaacuUCUUGAGCCAGCa-AGCu -3'
miRNA:   3'- -CguCG-GUAU------GGAACUCGGUCGcgUCG- -5'
3452 5' -55.2 NC_001604.1 + 18898 0.66 0.598552
Target:  5'- -gAGCCGU----UGAGCCAGCGCc-- -3'
miRNA:   3'- cgUCGGUAuggaACUCGGUCGCGucg -5'
3452 5' -55.2 NC_001604.1 + 29762 0.66 0.598552
Target:  5'- gGCAGaCCAc-UCUUGA-CCAGCGuCAGUg -3'
miRNA:   3'- -CGUC-GGUauGGAACUcGGUCGC-GUCG- -5'
3452 5' -55.2 NC_001604.1 + 34064 0.66 0.595141
Target:  5'- uGCAGCCAUagcauagaaACCaccagcgagacccaUagaggugaUGAuGCuCAGCGCAGCg -3'
miRNA:   3'- -CGUCGGUA---------UGG--------------A--------ACU-CG-GUCGCGUCG- -5'
3452 5' -55.2 NC_001604.1 + 5068 0.66 0.587195
Target:  5'- cCAGCCAUugACC---AGCCAGUGCcuuAGUg -3'
miRNA:   3'- cGUCGGUA--UGGaacUCGGUCGCG---UCG- -5'
3452 5' -55.2 NC_001604.1 + 29310 0.66 0.575879
Target:  5'- -aAGCUGU-CCUUGGGUccucuugguuCAGCGCAGa -3'
miRNA:   3'- cgUCGGUAuGGAACUCG----------GUCGCGUCg -5'
3452 5' -55.2 NC_001604.1 + 21633 0.69 0.426165
Target:  5'- -gGGUCGUcCCgcauagGuGCCAGUGCAGCc -3'
miRNA:   3'- cgUCGGUAuGGaa----CuCGGUCGCGUCG- -5'
3452 5' -55.2 NC_001604.1 + 38703 0.69 0.406655
Target:  5'- --uGCgAUAcCCUUGAGCCAGUcauGCAGa -3'
miRNA:   3'- cguCGgUAU-GGAACUCGGUCG---CGUCg -5'
3452 5' -55.2 NC_001604.1 + 3078 0.7 0.361304
Target:  5'- aUAGCCAU-CCggucagcauuacGCCAGUGCAGCg -3'
miRNA:   3'- cGUCGGUAuGGaacu--------CGGUCGCGUCG- -5'
3452 5' -55.2 NC_001604.1 + 15847 0.75 0.180781
Target:  5'- aGCgAGCCAUGaagUGAGCCaagcAGCGUAGCu -3'
miRNA:   3'- -CG-UCGGUAUggaACUCGG----UCGCGUCG- -5'
3452 5' -55.2 NC_001604.1 + 21799 1.14 0.000229
Target:  5'- uGCAGCCAUACCUUGAGCCAGCGCAGCa -3'
miRNA:   3'- -CGUCGGUAUGGAACUCGGUCGCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.