miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3510 5' -52.5 NC_001623.1 + 106022 0.66 0.980434
Target:  5'- uCGUugG--GCGaUGCGgACGGUGaCGCc -3'
miRNA:   3'- -GCAugUaaUGCaGCGCgUGCCAC-GCG- -5'
3510 5' -52.5 NC_001623.1 + 3030 0.66 0.980434
Target:  5'- gCGUGCAca--GaUCGUGCACGuUGCGUc -3'
miRNA:   3'- -GCAUGUaaugC-AGCGCGUGCcACGCG- -5'
3510 5' -52.5 NC_001623.1 + 65521 0.66 0.978157
Target:  5'- uGUACAgaguCGUCGC-CAUGauuaugcaGUGCGCc -3'
miRNA:   3'- gCAUGUaau-GCAGCGcGUGC--------CACGCG- -5'
3510 5' -52.5 NC_001623.1 + 38171 0.66 0.97569
Target:  5'- -cUGCGUggACGUgGUGCccgACGGgaUGCGCa -3'
miRNA:   3'- gcAUGUAa-UGCAgCGCG---UGCC--ACGCG- -5'
3510 5' -52.5 NC_001623.1 + 30884 0.67 0.970155
Target:  5'- uCGgcgGCGggcGCGuUCGCGCucCGGUacGCGCg -3'
miRNA:   3'- -GCa--UGUaa-UGC-AGCGCGu-GCCA--CGCG- -5'
3510 5' -52.5 NC_001623.1 + 114933 0.67 0.970155
Target:  5'- cCGUAaaaggGCGUCuGCuGCGCGGUGacaaaCGCg -3'
miRNA:   3'- -GCAUguaa-UGCAG-CG-CGUGCCAC-----GCG- -5'
3510 5' -52.5 NC_001623.1 + 65384 0.67 0.967073
Target:  5'- -aUugGUUGCGUUGCGCAaacacuugGCGCc -3'
miRNA:   3'- gcAugUAAUGCAGCGCGUgcca----CGCG- -5'
3510 5' -52.5 NC_001623.1 + 90277 0.68 0.952503
Target:  5'- uCGUACAUguaccGCGgCGCGCugGG-GCc- -3'
miRNA:   3'- -GCAUGUAa----UGCaGCGCGugCCaCGcg -5'
3510 5' -52.5 NC_001623.1 + 35863 0.68 0.928918
Target:  5'- uCGUGCAUguUGUUGaGCGCGGUGgGg -3'
miRNA:   3'- -GCAUGUAauGCAGCgCGUGCCACgCg -5'
3510 5' -52.5 NC_001623.1 + 40106 0.69 0.905594
Target:  5'- uCGUccACAUgucgaGCGUCGaguuGCGCaGGUGUGCa -3'
miRNA:   3'- -GCA--UGUAa----UGCAGCg---CGUG-CCACGCG- -5'
3510 5' -52.5 NC_001623.1 + 31060 0.71 0.855554
Target:  5'- uGUGCc---CGUCGCGCGuacCGGaGCGCg -3'
miRNA:   3'- gCAUGuaauGCAGCGCGU---GCCaCGCG- -5'
3510 5' -52.5 NC_001623.1 + 68130 0.71 0.842597
Target:  5'- aCGUAgccUAUUACGUCGgGUGuggguucgucugcguUGGUGCGCu -3'
miRNA:   3'- -GCAU---GUAAUGCAGCgCGU---------------GCCACGCG- -5'
3510 5' -52.5 NC_001623.1 + 120134 0.71 0.839277
Target:  5'- uGUgGCGUUA--UCGCGCACGcUGCGCc -3'
miRNA:   3'- gCA-UGUAAUgcAGCGCGUGCcACGCG- -5'
3510 5' -52.5 NC_001623.1 + 92461 0.71 0.839277
Target:  5'- gCGUACAUgacaAUGUUGUgGCGaauguCGGUGCGCu -3'
miRNA:   3'- -GCAUGUAa---UGCAGCG-CGU-----GCCACGCG- -5'
3510 5' -52.5 NC_001623.1 + 85649 0.72 0.786005
Target:  5'- uGUGCcugAUGUCGCGCaugucgucgGCGG-GCGCu -3'
miRNA:   3'- gCAUGuaaUGCAGCGCG---------UGCCaCGCG- -5'
3510 5' -52.5 NC_001623.1 + 101198 0.74 0.707297
Target:  5'- cCGUAUugc-CGUcCGCGCACcGUGCGCg -3'
miRNA:   3'- -GCAUGuaauGCA-GCGCGUGcCACGCG- -5'
3510 5' -52.5 NC_001623.1 + 68816 0.75 0.613885
Target:  5'- uGUACGUguguccgGCGccguuaaaCGCGCACGGaUGCGCu -3'
miRNA:   3'- gCAUGUAa------UGCa-------GCGCGUGCC-ACGCG- -5'
3510 5' -52.5 NC_001623.1 + 2559 0.75 0.613885
Target:  5'- uGUACAgauacuugUGCGUCGCGUGCGGcaCGCc -3'
miRNA:   3'- gCAUGUa-------AUGCAGCGCGUGCCacGCG- -5'
3510 5' -52.5 NC_001623.1 + 101371 1.13 0.003443
Target:  5'- uCGUACAUUACGUCGCGCACGGUGCGCg -3'
miRNA:   3'- -GCAUGUAAUGCAGCGCGUGCCACGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.