miRNA display CGI


Results 21 - 40 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3574 5' -56.9 NC_001650.1 + 182954 0.67 0.849529
Target:  5'- gGAGGUGGCCuGcCCACuGaCCuCAUGUGg -3'
miRNA:   3'- gUUCUACCGG-C-GGUGuCaGG-GUGCAC- -5'
3574 5' -56.9 NC_001650.1 + 129078 0.67 0.849529
Target:  5'- cCAGGcuggacGUGGCCGCgACGGgcucgcUCCCGCGc- -3'
miRNA:   3'- -GUUC------UACCGGCGgUGUC------AGGGUGCac -5'
3574 5' -56.9 NC_001650.1 + 83451 0.67 0.847176
Target:  5'- --uGAUGGUgGCCcagagggaccaccuGCGcguGUCCCACGUGu -3'
miRNA:   3'- guuCUACCGgCGG--------------UGU---CAGGGUGCAC- -5'
3574 5' -56.9 NC_001650.1 + 128760 0.68 0.825253
Target:  5'- --cGAUGGCCGCCAgCucgcccCCCAUGUa -3'
miRNA:   3'- guuCUACCGGCGGU-Guca---GGGUGCAc -5'
3574 5' -56.9 NC_001650.1 + 31340 0.68 0.816811
Target:  5'- aAAGGUGGCCGa-GCAGUCCUucugcaggGCGg- -3'
miRNA:   3'- gUUCUACCGGCggUGUCAGGG--------UGCac -5'
3574 5' -56.9 NC_001650.1 + 41950 0.68 0.808205
Target:  5'- ---aAUGGCCGCCGgAGaCCuCugGUGg -3'
miRNA:   3'- guucUACCGGCGGUgUCaGG-GugCAC- -5'
3574 5' -56.9 NC_001650.1 + 125391 0.68 0.808205
Target:  5'- gCGGGAucuucUGGCCGCCu---UCCCGCGUc -3'
miRNA:   3'- -GUUCU-----ACCGGCGGugucAGGGUGCAc -5'
3574 5' -56.9 NC_001650.1 + 56222 0.68 0.799444
Target:  5'- -uGGGUGGCCGCgaACgAGUCCC-CGg- -3'
miRNA:   3'- guUCUACCGGCGg-UG-UCAGGGuGCac -5'
3574 5' -56.9 NC_001650.1 + 74539 0.68 0.799444
Target:  5'- gCAGGGaGGCCGCCACcguggcccuagAGUCCaACGg- -3'
miRNA:   3'- -GUUCUaCCGGCGGUG-----------UCAGGgUGCac -5'
3574 5' -56.9 NC_001650.1 + 72075 0.69 0.781491
Target:  5'- uCAAGGUGGCUgGCCacgaugacaucaACAGgCgCCACGUGg -3'
miRNA:   3'- -GUUCUACCGG-CGG------------UGUCaG-GGUGCAC- -5'
3574 5' -56.9 NC_001650.1 + 97492 0.69 0.753606
Target:  5'- ---cAUGGCCGCCAgAGUagCCCACa-- -3'
miRNA:   3'- guucUACCGGCGGUgUCA--GGGUGcac -5'
3574 5' -56.9 NC_001650.1 + 26423 0.69 0.744091
Target:  5'- -----gGGCUGCCGCGGgCCC-CGUGg -3'
miRNA:   3'- guucuaCCGGCGGUGUCaGGGuGCAC- -5'
3574 5' -56.9 NC_001650.1 + 81169 0.69 0.738336
Target:  5'- gGAGuUGGCCacgugcuucugguggGCCACGuagCCCACGUGg -3'
miRNA:   3'- gUUCuACCGG---------------CGGUGUca-GGGUGCAC- -5'
3574 5' -56.9 NC_001650.1 + 121870 0.69 0.734481
Target:  5'- gAAGGUGGCCGCCAgGucGUCCU-CGg- -3'
miRNA:   3'- gUUCUACCGGCGGUgU--CAGGGuGCac -5'
3574 5' -56.9 NC_001650.1 + 41473 0.7 0.724785
Target:  5'- uCGAGGUGuCgCGCCGCgaGGUCCC-CGUGg -3'
miRNA:   3'- -GUUCUACcG-GCGGUG--UCAGGGuGCAC- -5'
3574 5' -56.9 NC_001650.1 + 171855 0.7 0.724785
Target:  5'- cUAAGAUGGCCGCCGCucgCCUAa--- -3'
miRNA:   3'- -GUUCUACCGGCGGUGucaGGGUgcac -5'
3574 5' -56.9 NC_001650.1 + 5148 0.7 0.724785
Target:  5'- cUAAGAUGGCCGCCGCucgCCUAa--- -3'
miRNA:   3'- -GUUCUACCGGCGGUGucaGGGUgcac -5'
3574 5' -56.9 NC_001650.1 + 80560 0.7 0.695266
Target:  5'- gGGGAagGGCCGCCugGGcUCCGCGa- -3'
miRNA:   3'- gUUCUa-CCGGCGGugUCaGGGUGCac -5'
3574 5' -56.9 NC_001650.1 + 183926 0.7 0.692285
Target:  5'- aAAGAUGGCCGCCAgGggguuguggccucuGUCUgACGUu -3'
miRNA:   3'- gUUCUACCGGCGGUgU--------------CAGGgUGCAc -5'
3574 5' -56.9 NC_001650.1 + 17219 0.7 0.692285
Target:  5'- aAAGAUGGCCGCCAgGggguuguggccucuGUCUgACGUu -3'
miRNA:   3'- gUUCUACCGGCGGUgU--------------CAGGgUGCAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.