miRNA display CGI


Results 1 - 20 of 312 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3584 5' -59.5 NC_001650.1 + 119327 0.66 0.845507
Target:  5'- -aAAUGGC-GGCCGCgCAUCUgggcaUGCCCg -3'
miRNA:   3'- ggUUACCGcCCGGUGgGUGGA-----GUGGG- -5'
3584 5' -59.5 NC_001650.1 + 172869 0.66 0.845507
Target:  5'- cCCAAUGGgagcuaaggGGGaCUGCCCACUcaACCCc -3'
miRNA:   3'- -GGUUACCg--------CCC-GGUGGGUGGagUGGG- -5'
3584 5' -59.5 NC_001650.1 + 60315 0.66 0.845507
Target:  5'- uCCGcgGGCggcgggucGGGCCagACCCucggcgggcACCUCAUCa -3'
miRNA:   3'- -GGUuaCCG--------CCCGG--UGGG---------UGGAGUGGg -5'
3584 5' -59.5 NC_001650.1 + 6162 0.66 0.845507
Target:  5'- cCCAAUGGgagcuaaggGGGaCUGCCCACUcaACCCc -3'
miRNA:   3'- -GGUUACCg--------CCC-GGUGGGUGGagUGGG- -5'
3584 5' -59.5 NC_001650.1 + 109334 0.66 0.845507
Target:  5'- aCCg--GGUGcGCCGCcucguCCACCUCcCCCa -3'
miRNA:   3'- -GGuuaCCGCcCGGUG-----GGUGGAGuGGG- -5'
3584 5' -59.5 NC_001650.1 + 50663 0.66 0.845507
Target:  5'- cCCGcgGG-GGGCCugaccuUCUACCUgcUGCCCg -3'
miRNA:   3'- -GGUuaCCgCCCGGu-----GGGUGGA--GUGGG- -5'
3584 5' -59.5 NC_001650.1 + 116084 0.66 0.845507
Target:  5'- aCAGcaGCGcGGCCGCCC-UCgugugCACCCa -3'
miRNA:   3'- gGUUacCGC-CCGGUGGGuGGa----GUGGG- -5'
3584 5' -59.5 NC_001650.1 + 27673 0.66 0.845507
Target:  5'- cCCAGaugcUGGCGcGCCACUgcuacuaccugCAgUUCGCCCa -3'
miRNA:   3'- -GGUU----ACCGCcCGGUGG-----------GUgGAGUGGG- -5'
3584 5' -59.5 NC_001650.1 + 28289 0.66 0.845507
Target:  5'- cCCuauguuGUGGaUGGcGUCGCCCAcguCCUC-CCCg -3'
miRNA:   3'- -GGu-----UACC-GCC-CGGUGGGU---GGAGuGGG- -5'
3584 5' -59.5 NC_001650.1 + 131576 0.66 0.843196
Target:  5'- cCCAGccucuUGGCcagagucccguacaGGGCCcCCgGCCgggccCACCCg -3'
miRNA:   3'- -GGUU-----ACCG--------------CCCGGuGGgUGGa----GUGGG- -5'
3584 5' -59.5 NC_001650.1 + 8352 0.66 0.837742
Target:  5'- cCCGggGGUGaauGCCACCCcCCaCACUCa -3'
miRNA:   3'- -GGUuaCCGCc--CGGUGGGuGGaGUGGG- -5'
3584 5' -59.5 NC_001650.1 + 60099 0.66 0.837742
Target:  5'- gCCGAgGGUcuGGCCcgACCCGCC--GCCCg -3'
miRNA:   3'- -GGUUaCCGc-CCGG--UGGGUGGagUGGG- -5'
3584 5' -59.5 NC_001650.1 + 56852 0.66 0.837742
Target:  5'- gCGcgGGgGGGUCAgCUaggagGCCUCuuACCCg -3'
miRNA:   3'- gGUuaCCgCCCGGUgGG-----UGGAG--UGGG- -5'
3584 5' -59.5 NC_001650.1 + 2859 0.66 0.837742
Target:  5'- aCCu---GCcuGGCaacaGCCUACCUCACCCc -3'
miRNA:   3'- -GGuuacCGc-CCGg---UGGGUGGAGUGGG- -5'
3584 5' -59.5 NC_001650.1 + 89821 0.66 0.837742
Target:  5'- aCCGGgugcUGGUGGGUaagaGCuCCgACCUCucguGCCCg -3'
miRNA:   3'- -GGUU----ACCGCCCGg---UG-GG-UGGAG----UGGG- -5'
3584 5' -59.5 NC_001650.1 + 91616 0.66 0.837742
Target:  5'- -uGGUGaGCaGGCUggaggugauGCUgACCUCGCCCa -3'
miRNA:   3'- ggUUAC-CGcCCGG---------UGGgUGGAGUGGG- -5'
3584 5' -59.5 NC_001650.1 + 132759 0.66 0.837742
Target:  5'- aCCGggGGCGcGUCGCCCggggggcgcGCgUUGCCCa -3'
miRNA:   3'- -GGUuaCCGCcCGGUGGG---------UGgAGUGGG- -5'
3584 5' -59.5 NC_001650.1 + 77350 0.66 0.837742
Target:  5'- aCCGAgcucaugGGCgacgGGGCCGCCgCGaC-CACCCa -3'
miRNA:   3'- -GGUUa------CCG----CCCGGUGG-GUgGaGUGGG- -5'
3584 5' -59.5 NC_001650.1 + 143985 0.66 0.837742
Target:  5'- aCCAggGuGUGGGCCuuCUugaggcuCCUCACCg -3'
miRNA:   3'- -GGUuaC-CGCCCGGugGGu------GGAGUGGg -5'
3584 5' -59.5 NC_001650.1 + 109969 0.66 0.837742
Target:  5'- aCCuugGGCcaGGCCACCUcggUCACCCa -3'
miRNA:   3'- -GGuuaCCGc-CCGGUGGGuggAGUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.