miRNA display CGI


Results 1 - 20 of 312 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3584 5' -59.5 NC_001650.1 + 32169 0.66 0.821704
Target:  5'- gUCGggGGCGGGCCucGCgUCGuCCUCugUCu -3'
miRNA:   3'- -GGUuaCCGCCCGG--UG-GGU-GGAGugGG- -5'
3584 5' -59.5 NC_001650.1 + 91616 0.66 0.837742
Target:  5'- -uGGUGaGCaGGCUggaggugauGCUgACCUCGCCCa -3'
miRNA:   3'- ggUUAC-CGcCCGG---------UGGgUGGAGUGGG- -5'
3584 5' -59.5 NC_001650.1 + 2859 0.66 0.837742
Target:  5'- aCCu---GCcuGGCaacaGCCUACCUCACCCc -3'
miRNA:   3'- -GGuuacCGc-CCGg---UGGGUGGAGUGGG- -5'
3584 5' -59.5 NC_001650.1 + 93438 0.66 0.829805
Target:  5'- aCGA-GGCGGG-UACCCuguCCUCGCa- -3'
miRNA:   3'- gGUUaCCGCCCgGUGGGu--GGAGUGgg -5'
3584 5' -59.5 NC_001650.1 + 181921 0.66 0.829805
Target:  5'- gCCGca-GCGGGCUcCCCcCUUCACCg -3'
miRNA:   3'- -GGUuacCGCCCGGuGGGuGGAGUGGg -5'
3584 5' -59.5 NC_001650.1 + 49823 0.66 0.829805
Target:  5'- uCCGGUGGUGuGGaaACCCAUgaCGuCCCu -3'
miRNA:   3'- -GGUUACCGC-CCggUGGGUGgaGU-GGG- -5'
3584 5' -59.5 NC_001650.1 + 145749 0.66 0.829805
Target:  5'- gCC-AUGGCGGGCaggUCCGCCggguUCCa -3'
miRNA:   3'- -GGuUACCGCCCGgu-GGGUGGagu-GGG- -5'
3584 5' -59.5 NC_001650.1 + 23800 0.66 0.821704
Target:  5'- uCCuuuGUGGCcucGGCC-UUCGCCUaCACCCc -3'
miRNA:   3'- -GGu--UACCGc--CCGGuGGGUGGA-GUGGG- -5'
3584 5' -59.5 NC_001650.1 + 121396 0.66 0.813445
Target:  5'- cCCGGccGGgGGcGCCGCCUcgcGCCUCAagcaCCu -3'
miRNA:   3'- -GGUUa-CCgCC-CGGUGGG---UGGAGUg---GG- -5'
3584 5' -59.5 NC_001650.1 + 127759 0.66 0.805036
Target:  5'- -gGGUGGUcacGGGCCcgGCCCACC-CcUCCa -3'
miRNA:   3'- ggUUACCG---CCCGG--UGGGUGGaGuGGG- -5'
3584 5' -59.5 NC_001650.1 + 44803 0.66 0.805036
Target:  5'- uCC-GUGGUGGG-CACCCAgCagACCUu -3'
miRNA:   3'- -GGuUACCGCCCgGUGGGUgGagUGGG- -5'
3584 5' -59.5 NC_001650.1 + 119122 0.66 0.821704
Target:  5'- cCCAGauGCGcGGCCGCCauuuuucacuCACCUCcugcuACCCc -3'
miRNA:   3'- -GGUUacCGC-CCGGUGG----------GUGGAG-----UGGG- -5'
3584 5' -59.5 NC_001650.1 + 15214 0.66 0.829805
Target:  5'- gCCGca-GCGGGCUcCCCcCUUCACCg -3'
miRNA:   3'- -GGUuacCGCCCGGuGGGuGGAGUGGg -5'
3584 5' -59.5 NC_001650.1 + 22513 0.66 0.833
Target:  5'- cUCGA-GGCcccacagcuucaccgGGGCCACCCGCgccuccaucauCUCcCCCa -3'
miRNA:   3'- -GGUUaCCG---------------CCCGGUGGGUG-----------GAGuGGG- -5'
3584 5' -59.5 NC_001650.1 + 131338 0.66 0.829805
Target:  5'- cCCGcgGGUGGGgC-CCgGCCggggGCCCu -3'
miRNA:   3'- -GGUuaCCGCCCgGuGGgUGGag--UGGG- -5'
3584 5' -59.5 NC_001650.1 + 121668 0.66 0.805036
Target:  5'- aCGAccUGGC-GGCCACCUucaaggcgGCCUCAgagUCCa -3'
miRNA:   3'- gGUU--ACCGcCCGGUGGG--------UGGAGU---GGG- -5'
3584 5' -59.5 NC_001650.1 + 25067 0.66 0.804187
Target:  5'- gCCA---GCGGGCCcgccaugGCCUACCcCGCCa -3'
miRNA:   3'- -GGUuacCGCCCGG-------UGGGUGGaGUGGg -5'
3584 5' -59.5 NC_001650.1 + 28289 0.66 0.845507
Target:  5'- cCCuauguuGUGGaUGGcGUCGCCCAcguCCUC-CCCg -3'
miRNA:   3'- -GGu-----UACC-GCC-CGGUGGGU---GGAGuGGG- -5'
3584 5' -59.5 NC_001650.1 + 127953 0.66 0.813445
Target:  5'- aCCAA-GGUgaacaGGuGCCuGCCCGCCaucuaCACCCa -3'
miRNA:   3'- -GGUUaCCG-----CC-CGG-UGGGUGGa----GUGGG- -5'
3584 5' -59.5 NC_001650.1 + 60632 0.66 0.829805
Target:  5'- gCCGGUugaGGgGGGCCACCguCUccagCugCCu -3'
miRNA:   3'- -GGUUA---CCgCCCGGUGGguGGa---GugGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.