Results 1 - 20 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
404 | 3' | -56.1 | AC_000011.1 | + | 3761 | 0.68 | 0.419471 |
Target: 5'- cCggCgCCCAUGGCcauuccgcGCACGGCGCuGGCg -3' miRNA: 3'- aGaaG-GGGUACCG--------CGUGUUGUG-CCGg -5' |
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404 | 3' | -56.1 | AC_000011.1 | + | 3879 | 0.69 | 0.390121 |
Target: 5'- --cUCgCCCA-GGCGCugGgucaaggccucgaGCugGGCCa -3' miRNA: 3'- agaAG-GGGUaCCGCGugU-------------UGugCCGG- -5' |
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404 | 3' | -56.1 | AC_000011.1 | + | 4152 | 0.66 | 0.544218 |
Target: 5'- --aUCaCCCAgucauagcaggGGCGCAgGGCAUGGUg -3' miRNA: 3'- agaAG-GGGUa----------CCGCGUgUUGUGCCGg -5' |
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404 | 3' | -56.1 | AC_000011.1 | + | 6185 | 0.66 | 0.566319 |
Target: 5'- uUUUUCCUUGUcGGCGCGCuccuugGCGGCg -3' miRNA: 3'- -AGAAGGGGUA-CCGCGUGuug---UGCCGg -5' |
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404 | 3' | -56.1 | AC_000011.1 | + | 6301 | 0.77 | 0.12073 |
Target: 5'- gUCUUCCCCgaauggaagugcGUGGCGCGCGAgUACGuGCa -3' miRNA: 3'- -AGAAGGGG------------UACCGCGUGUU-GUGC-CGg -5' |
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404 | 3' | -56.1 | AC_000011.1 | + | 7107 | 0.68 | 0.429219 |
Target: 5'- cCUUCUCCAcggggagGGCGUAgGccuGgGCGGCCu -3' miRNA: 3'- aGAAGGGGUa------CCGCGUgU---UgUGCCGG- -5' |
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404 | 3' | -56.1 | AC_000011.1 | + | 7158 | 0.66 | 0.522406 |
Target: 5'- --cUCCCCGUGGagaagggcugcUGCGCcuACAaGGCCg -3' miRNA: 3'- agaAGGGGUACC-----------GCGUGu-UGUgCCGG- -5' |
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404 | 3' | -56.1 | AC_000011.1 | + | 7587 | 0.69 | 0.363909 |
Target: 5'- ---cCCCCAUcucccgacugGGCGCucgaGCAGCACGGgCu -3' miRNA: 3'- agaaGGGGUA----------CCGCG----UGUUGUGCCgG- -5' |
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404 | 3' | -56.1 | AC_000011.1 | + | 7907 | 0.7 | 0.338104 |
Target: 5'- uUCUUCCCCAUcGGCuCGCAuccucGCACcgaaaGGCUc -3' miRNA: 3'- -AGAAGGGGUA-CCGcGUGU-----UGUG-----CCGG- -5' |
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404 | 3' | -56.1 | AC_000011.1 | + | 8606 | 0.71 | 0.298114 |
Target: 5'- gUCUUCUCCG-GGCGCAguacCAgaaccuaccgcGCGCGGCg -3' miRNA: 3'- -AGAAGGGGUaCCGCGU----GU-----------UGUGCCGg -5' |
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404 | 3' | -56.1 | AC_000011.1 | + | 8783 | 0.66 | 0.544218 |
Target: 5'- --gUCUCCGcggccGGCGCGCucCACGGUg -3' miRNA: 3'- agaAGGGGUa----CCGCGUGuuGUGCCGg -5' |
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404 | 3' | -56.1 | AC_000011.1 | + | 9365 | 0.66 | 0.533273 |
Target: 5'- gUCUg-CCCGUGcGcCGCcgGCGACGCaGGCCc -3' miRNA: 3'- -AGAagGGGUAC-C-GCG--UGUUGUG-CCGG- -5' |
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404 | 3' | -56.1 | AC_000011.1 | + | 9920 | 0.71 | 0.283175 |
Target: 5'- gUCcagCCCCAgcgcGGCuucgggcucacGCGCAuGCACGGCCg -3' miRNA: 3'- -AGaa-GGGGUa---CCG-----------CGUGU-UGUGCCGG- -5' |
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404 | 3' | -56.1 | AC_000011.1 | + | 11220 | 0.72 | 0.229327 |
Target: 5'- aUCagCCCCGcGcGCGCGCAcguggcCGCGGCCa -3' miRNA: 3'- -AGaaGGGGUaC-CGCGUGUu-----GUGCCGG- -5' |
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404 | 3' | -56.1 | AC_000011.1 | + | 13112 | 0.69 | 0.391047 |
Target: 5'- gCUgggCUCCAUGuuGCGCGCGgucaugucgaGCGCGGCg -3' miRNA: 3'- aGAa--GGGGUAC--CGCGUGU----------UGUGCCGg -5' |
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404 | 3' | -56.1 | AC_000011.1 | + | 13414 | 0.67 | 0.511627 |
Target: 5'- ---aCCgCCGcGGCaGCACccuCGCGGCCg -3' miRNA: 3'- agaaGG-GGUaCCG-CGUGuu-GUGCCGG- -5' |
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404 | 3' | -56.1 | AC_000011.1 | + | 13603 | 0.69 | 0.372809 |
Target: 5'- --aUCCCCG-GGCGuCGCAGggggcCACGaGCCg -3' miRNA: 3'- agaAGGGGUaCCGC-GUGUU-----GUGC-CGG- -5' |
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404 | 3' | -56.1 | AC_000011.1 | + | 15685 | 0.69 | 0.391047 |
Target: 5'- gUCgUCgaCgGUGGUGCGCGaccgcACGCGGCCc -3' miRNA: 3'- -AGaAGg-GgUACCGCGUGU-----UGUGCCGG- -5' |
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404 | 3' | -56.1 | AC_000011.1 | + | 15808 | 0.72 | 0.248433 |
Target: 5'- ---cCCCCGccauGCGCGCGGCGCGaGCCu -3' miRNA: 3'- agaaGGGGUac--CGCGUGUUGUGC-CGG- -5' |
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404 | 3' | -56.1 | AC_000011.1 | + | 15846 | 0.66 | 0.566319 |
Target: 5'- -----gCCA-GGCGCACGggacGCAgGGCCa -3' miRNA: 3'- agaaggGGUaCCGCGUGU----UGUgCCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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