Results 1 - 8 of 8 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 418 | 5' | -46.7 | AC_000011.1 | + | 9305 | 0.66 | 0.966269 |
|
Target: 5'- aGGAAguAGAAGagaUGuuAGUGGAGgaGg -3' miRNA: 3'- -CUUUguUCUUCg--ACuuUCACCUCgaC- -5' |
|||||||
| 418 | 5' | -46.7 | AC_000011.1 | + | 10981 | 0.66 | 0.962299 |
|
Target: 5'- aGGGCGAGggGCUGGcgcgccugGGGGCg- -3' miRNA: 3'- cUUUGUUCuuCGACUuuca----CCUCGac -5' |
|||||||
| 418 | 5' | -46.7 | AC_000011.1 | + | 34417 | 0.66 | 0.961046 |
|
Target: 5'- ---cCGAGGAGUUGAGAGUGcugaagagaugcauGAGCa- -3' miRNA: 3'- cuuuGUUCUUCGACUUUCAC--------------CUCGac -5' |
|||||||
| 418 | 5' | -46.7 | AC_000011.1 | + | 16572 | 0.67 | 0.948472 |
|
Target: 5'- cGGGCuuGAGGCUGGc-GUGGGGUUGc -3' miRNA: 3'- cUUUGuuCUUCGACUuuCACCUCGAC- -5' |
|||||||
| 418 | 5' | -46.7 | AC_000011.1 | + | 10936 | 0.68 | 0.904397 |
|
Target: 5'- uGggGCGGGGgcagaagcgccGGCUGuGGAG-GGGGCUGu -3' miRNA: 3'- -CuuUGUUCU-----------UCGAC-UUUCaCCUCGAC- -5' |
|||||||
| 418 | 5' | -46.7 | AC_000011.1 | + | 9874 | 0.68 | 0.904397 |
|
Target: 5'- cGGGCGAGGAGgaGGugcccGUGGAGCg- -3' miRNA: 3'- cUUUGUUCUUCgaCUuu---CACCUCGac -5' |
|||||||
| 418 | 5' | -46.7 | AC_000011.1 | + | 16632 | 0.69 | 0.853596 |
|
Target: 5'- cAAGCGccAGAAGCUGGAAGacGuGCUGg -3' miRNA: 3'- cUUUGU--UCUUCGACUUUCacCuCGAC- -5' |
|||||||
| 418 | 5' | -46.7 | AC_000011.1 | + | 25508 | 1.08 | 0.004258 |
|
Target: 5'- gGAAACAAGAAGCUGAAAGUGGAGCUGc -3' miRNA: 3'- -CUUUGUUCUUCGACUUUCACCUCGAC- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home