miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4305 3' -58.5 NC_001716.2 + 8903 0.66 0.791761
Target:  5'- -uGCUGCGGCUCgauCCCggaaaAACCUUGu -3'
miRNA:   3'- ccCGACGCCGGGauuGGGa----UUGGGAU- -5'
4305 3' -58.5 NC_001716.2 + 151806 0.66 0.791761
Target:  5'- -uGCUGCGGCUCgauCCCggaaaAACCUUGu -3'
miRNA:   3'- ccCGACGCCGGGauuGGGa----UUGGGAU- -5'
4305 3' -58.5 NC_001716.2 + 9703 0.67 0.722573
Target:  5'- aGGGCcGCaGCCCUAggguuaggguuaggGCCgcAGCCCUAg -3'
miRNA:   3'- -CCCGaCGcCGGGAU--------------UGGgaUUGGGAU- -5'
4305 3' -58.5 NC_001716.2 + 9907 0.67 0.722573
Target:  5'- aGGGCcGCaGCCCUAggguuaggguuaggGCCgcAGCCCUAg -3'
miRNA:   3'- -CCCGaCGcCGGGAU--------------UGGgaUUGGGAU- -5'
4305 3' -58.5 NC_001716.2 + 152606 0.67 0.722573
Target:  5'- aGGGCcGCaGCCCUAggguuaggguuaggGCCgcAGCCCUAg -3'
miRNA:   3'- -CCCGaCGcCGGGAU--------------UGGgaUUGGGAU- -5'
4305 3' -58.5 NC_001716.2 + 152810 0.67 0.722573
Target:  5'- aGGGCcGCaGCCCUAggguuaggguuaggGCCgcAGCCCUAg -3'
miRNA:   3'- -CCCGaCGcCGGGAU--------------UGGgaUUGGGAU- -5'
4305 3' -58.5 NC_001716.2 + 152658 0.67 0.712698
Target:  5'- cGGGCcGCaGCCCUAggguuaggguuaggGCCgcAGCCCUAg -3'
miRNA:   3'- -CCCGaCGcCGGGAU--------------UGGgaUUGGGAU- -5'
4305 3' -58.5 NC_001716.2 + 152428 0.67 0.712698
Target:  5'- cGGGCcGCaGCCCUAggguuaggguuaggGCCgcAGCCCUAg -3'
miRNA:   3'- -CCCGaCGcCGGGAU--------------UGGgaUUGGGAU- -5'
4305 3' -58.5 NC_001716.2 + 9843 0.67 0.712698
Target:  5'- cGGGCcGCaGCCCUAggguuaggguuaggGCCgcAGCCCUAg -3'
miRNA:   3'- -CCCGaCGcCGGGAU--------------UGGgaUUGGGAU- -5'
4305 3' -58.5 NC_001716.2 + 9755 0.67 0.712698
Target:  5'- cGGGCcGCaGCCCUAggguuaggguuaggGCCgcAGCCCUAg -3'
miRNA:   3'- -CCCGaCGcCGGGAU--------------UGGgaUUGGGAU- -5'
4305 3' -58.5 NC_001716.2 + 9525 0.67 0.712698
Target:  5'- cGGGCcGCaGCCCUAggguuaggguuaggGCCgcAGCCCUAg -3'
miRNA:   3'- -CCCGaCGcCGGGAU--------------UGGgaUUGGGAU- -5'
4305 3' -58.5 NC_001716.2 + 152746 0.67 0.712698
Target:  5'- cGGGCcGCaGCCCUAggguuaggguuaggGCCgcAGCCCUAg -3'
miRNA:   3'- -CCCGaCGcCGGGAU--------------UGGgaUUGGGAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.