miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
452 5' -63.6 AC_000013.1 + 11306 0.66 0.28996
Target:  5'- gCUCggcacgCgCCUCCUCGCaugcgaugaGCCUCuCGUCGu -3'
miRNA:   3'- gGAGa-----G-GGAGGAGCGg--------CGGGG-GCAGC- -5'
452 5' -63.6 AC_000013.1 + 43860 0.67 0.269889
Target:  5'- -aUCUCUCUUC-CGCCacGCCCUCGUUa -3'
miRNA:   3'- ggAGAGGGAGGaGCGG--CGGGGGCAGc -5'
452 5' -63.6 AC_000013.1 + 43975 0.67 0.263452
Target:  5'- aCUCUUCCgaauccaCUUCGCCGCCUUCGa-- -3'
miRNA:   3'- gGAGAGGGa------GGAGCGGCGGGGGCagc -5'
452 5' -63.6 AC_000013.1 + 3152 0.67 0.250952
Target:  5'- aCCUCUaCUCaUCUCcaCCGCCCCCGaCGa -3'
miRNA:   3'- -GGAGA-GGGaGGAGc-GGCGGGGGCaGC- -5'
452 5' -63.6 AC_000013.1 + 16327 0.68 0.211554
Target:  5'- uCCUCUUCCUCCuUCgcgacgucgaugccgGCCGCUCCUccuccuucgccuguGUCGg -3'
miRNA:   3'- -GGAGAGGGAGG-AG---------------CGGCGGGGG--------------CAGC- -5'
452 5' -63.6 AC_000013.1 + 14457 0.69 0.205789
Target:  5'- uCCUCcUCCgCCUCGCCGCCgCUGg-- -3'
miRNA:   3'- -GGAGaGGGaGGAGCGGCGGgGGCagc -5'
452 5' -63.6 AC_000013.1 + 25229 0.69 0.185958
Target:  5'- aCCUgUCgaaUCUCCUCGUCGUCUUCGUCc -3'
miRNA:   3'- -GGAgAG---GGAGGAGCGGCGGGGGCAGc -5'
452 5' -63.6 AC_000013.1 + 30387 0.7 0.151306
Target:  5'- gCCgCUUCCUCCUCcuCCGCCCCCc--- -3'
miRNA:   3'- -GGaGAGGGAGGAGc-GGCGGGGGcagc -5'
452 5' -63.6 AC_000013.1 + 8018 0.75 0.067778
Target:  5'- cCCUCUCCUUCaugCGCCGauaCCCCGacUCGg -3'
miRNA:   3'- -GGAGAGGGAGga-GCGGCg--GGGGC--AGC- -5'
452 5' -63.6 AC_000013.1 + 5259 1.09 0.000169
Target:  5'- cCCUCUCCCUCCUCGCCGCCCCCGUCGc -3'
miRNA:   3'- -GGAGAGGGAGGAGCGGCGGGGGCAGC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.