miRNA display CGI


Results 1 - 5 of 5 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6073 5' -59.7 NC_001819.1 + 2863 0.66 0.110469
Target:  5'- aCCAGUaUUCCCUGGucCAauaGUCUCUGUa -3'
miRNA:   3'- -GGUCA-GGGGGACCuuGUg--CGGGGACG- -5'
6073 5' -59.7 NC_001819.1 + 2553 0.67 0.100511
Target:  5'- cUCAGguugugggaCCaaUGGGACA-GCCCCUGCa -3'
miRNA:   3'- -GGUCag-------GGggACCUUGUgCGGGGACG- -5'
6073 5' -59.7 NC_001819.1 + 3792 0.67 0.085772
Target:  5'- cCCAGUggCCgCUGGGugGCcCCCUUGCc -3'
miRNA:   3'- -GGUCAg-GGgGACCUugUGcGGGGACG- -5'
6073 5' -59.7 NC_001819.1 + 342 0.68 0.077942
Target:  5'- cCCGG-CCgcaaCCCUGGGAgACGUCCCa-- -3'
miRNA:   3'- -GGUCaGG----GGGACCUUgUGCGGGGacg -5'
6073 5' -59.7 NC_001819.1 + 2862 1.12 0.000012
Target:  5'- gCCAGUCCCCCUGGAACACGCCCCUGCu -3'
miRNA:   3'- -GGUCAGGGGGACCUUGUGCGGGGACG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.