miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6108 5' -56.6 NC_001826.1 + 118816 0.66 0.861136
Target:  5'- gGGCCCGGGGaggggggCCgGGCGGggggagugccccUCCCg -3'
miRNA:   3'- gUCGGGUCCCagaa---GGaUUGCC------------AGGG- -5'
6108 5' -56.6 NC_001826.1 + 70915 0.66 0.85334
Target:  5'- uGGaCCuGGGUCUUCUUuucuUGGUCUCu -3'
miRNA:   3'- gUCgGGuCCCAGAAGGAuu--GCCAGGG- -5'
6108 5' -56.6 NC_001826.1 + 42836 0.66 0.84534
Target:  5'- aAGCCCAGGGUCUguaUAACaugaCCa -3'
miRNA:   3'- gUCGGGUCCCAGAaggAUUGccagGG- -5'
6108 5' -56.6 NC_001826.1 + 15976 0.66 0.829603
Target:  5'- aAGCCUGGGaUCUguguacuacaaauuaCUUAAUGGUCCCc -3'
miRNA:   3'- gUCGGGUCCcAGAa--------------GGAUUGCCAGGG- -5'
6108 5' -56.6 NC_001826.1 + 44049 0.66 0.828756
Target:  5'- aAGCCCAGGGguua-UUugUGGUCCUg -3'
miRNA:   3'- gUCGGGUCCCagaagGAuuGCCAGGG- -5'
6108 5' -56.6 NC_001826.1 + 119202 0.67 0.811445
Target:  5'- gCAGCCCgguAGGGUCU-CUgGGCGccCCCa -3'
miRNA:   3'- -GUCGGG---UCCCAGAaGGaUUGCcaGGG- -5'
6108 5' -56.6 NC_001826.1 + 29187 0.67 0.802538
Target:  5'- aCGGcCCCAGGG-CggCCaGGCGucaGUCCCu -3'
miRNA:   3'- -GUC-GGGUCCCaGaaGGaUUGC---CAGGG- -5'
6108 5' -56.6 NC_001826.1 + 117246 0.67 0.78426
Target:  5'- gAGCCCAGGGgcagugUCaCUAguugGCGGgaccgUCCCu -3'
miRNA:   3'- gUCGGGUCCCaga---AG-GAU----UGCC-----AGGG- -5'
6108 5' -56.6 NC_001826.1 + 101034 0.68 0.72639
Target:  5'- cCGGCCCGGGGUgCgggUCCcc-CGG-CCUg -3'
miRNA:   3'- -GUCGGGUCCCA-Ga--AGGauuGCCaGGG- -5'
6108 5' -56.6 NC_001826.1 + 118493 0.71 0.572938
Target:  5'- uGGCCCucagcAGGGUCcgggugCCUGuggGCGgGUCCCg -3'
miRNA:   3'- gUCGGG-----UCCCAGaa----GGAU---UGC-CAGGG- -5'
6108 5' -56.6 NC_001826.1 + 116904 0.72 0.483641
Target:  5'- aGGCCCAGGGUUgaCUgGACGGgucuggaCCCg -3'
miRNA:   3'- gUCGGGUCCCAGaaGGaUUGCCa------GGG- -5'
6108 5' -56.6 NC_001826.1 + 100335 0.75 0.376249
Target:  5'- cCGGCCCGGGGUgcggguccccCggCCUGGggagcCGGUCCCc -3'
miRNA:   3'- -GUCGGGUCCCA----------GaaGGAUU-----GCCAGGG- -5'
6108 5' -56.6 NC_001826.1 + 100235 0.75 0.376249
Target:  5'- cCGGCCCGGGGUgcggguccccCggCCUGGggagcCGGUCCCc -3'
miRNA:   3'- -GUCGGGUCCCA----------GaaGGAUU-----GCCAGGG- -5'
6108 5' -56.6 NC_001826.1 + 100135 0.75 0.376249
Target:  5'- cCGGCCCGGGGUgcggguccccCggCCUGGggagcCGGUCCCc -3'
miRNA:   3'- -GUCGGGUCCCA----------GaaGGAUU-----GCCAGGG- -5'
6108 5' -56.6 NC_001826.1 + 100035 0.75 0.376249
Target:  5'- cCGGCCCGGGGUgcggguccccCggCCUGGggagcCGGUCCCc -3'
miRNA:   3'- -GUCGGGUCCCA----------GaaGGAUU-----GCCAGGG- -5'
6108 5' -56.6 NC_001826.1 + 99935 0.75 0.376249
Target:  5'- cCGGCCCGGGGUgcggguccccCggCCUGGggagcCGGUCCCc -3'
miRNA:   3'- -GUCGGGUCCCA----------GaaGGAUU-----GCCAGGG- -5'
6108 5' -56.6 NC_001826.1 + 99536 0.75 0.376249
Target:  5'- cCGGCCCGGGGUgcggguccccCggCCUGGggagcCGGUCCCc -3'
miRNA:   3'- -GUCGGGUCCCA----------GaaGGAUU-----GCCAGGG- -5'
6108 5' -56.6 NC_001826.1 + 99436 0.75 0.376249
Target:  5'- cCGGCCCGGGGUgcggguccccCggCCUGGggagcCGGUCCCc -3'
miRNA:   3'- -GUCGGGUCCCA----------GaaGGAUU-----GCCAGGG- -5'
6108 5' -56.6 NC_001826.1 + 99136 0.75 0.376249
Target:  5'- cCGGCCCGGGGUgcggguccccCggCCUGGggagcCGGUCCCc -3'
miRNA:   3'- -GUCGGGUCCCA----------GaaGGAUU-----GCCAGGG- -5'
6108 5' -56.6 NC_001826.1 + 100934 0.75 0.376249
Target:  5'- cCGGCCCGGGGUgcggguccccCggCCUGGggagcCGGUCCCc -3'
miRNA:   3'- -GUCGGGUCCCA----------GaaGGAUU-----GCCAGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.