miRNA display CGI


Results 1 - 9 of 9 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6199 3' -58.4 NC_001844.1 + 86469 0.66 0.729098
Target:  5'- --uGGCAGUGugUGUuaguuuagauuGGGgUGGGGCa -3'
miRNA:   3'- augUCGUCGCugACG-----------UUCgACCCCGa -5'
6199 3' -58.4 NC_001844.1 + 31231 0.67 0.698792
Target:  5'- gUAC-GCAGCGuACaUGCGAcUUGGGGCg -3'
miRNA:   3'- -AUGuCGUCGC-UG-ACGUUcGACCCCGa -5'
6199 3' -58.4 NC_001844.1 + 24339 0.68 0.626488
Target:  5'- -uCAGCAGCcg-UGCAAGgUGGGGUUu -3'
miRNA:   3'- auGUCGUCGcugACGUUCgACCCCGA- -5'
6199 3' -58.4 NC_001844.1 + 122060 0.68 0.605741
Target:  5'- cGCGGCGGCGGCgGCGuGUcGGGGa- -3'
miRNA:   3'- aUGUCGUCGCUGaCGUuCGaCCCCga -5'
6199 3' -58.4 NC_001844.1 + 82514 0.69 0.585075
Target:  5'- --aAGCGGCGAgccccaucUUGC-GGCUGGGGUa -3'
miRNA:   3'- augUCGUCGCU--------GACGuUCGACCCCGa -5'
6199 3' -58.4 NC_001844.1 + 79963 0.69 0.585075
Target:  5'- aUugAGCgGGUGGC-GCGGgucGCUGGGGCUg -3'
miRNA:   3'- -AugUCG-UCGCUGaCGUU---CGACCCCGA- -5'
6199 3' -58.4 NC_001844.1 + 141764 0.69 0.573765
Target:  5'- --gAGCAGCGGCUcgcgcugGCAGGUuccgagcccUGGGGCc -3'
miRNA:   3'- augUCGUCGCUGA-------CGUUCG---------ACCCCGa -5'
6199 3' -58.4 NC_001844.1 + 10163 0.69 0.564548
Target:  5'- cUGCAGCcagGGCgGACUGUAGGCggagcaUGGuGGCUg -3'
miRNA:   3'- -AUGUCG---UCG-CUGACGUUCG------ACC-CCGA- -5'
6199 3' -58.4 NC_001844.1 + 3922 1.06 0.001816
Target:  5'- cUACAGCAGCGACUGCAAGCUGGGGCUa -3'
miRNA:   3'- -AUGUCGUCGCUGACGUUCGACCCCGA- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.