miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6325 5' -43.1 NC_001846.1 + 9025 0.66 0.99824
Target:  5'- --cUAUUa-CAGCAACCACAACAg-- -3'
miRNA:   3'- gaaGUAAgaGUUGUUGGUGUUGUacg -5'
6325 5' -43.1 NC_001846.1 + 5268 0.66 0.99824
Target:  5'- --gCAUcUUUAACAGCCACAAgAucUGCc -3'
miRNA:   3'- gaaGUAaGAGUUGUUGGUGUUgU--ACG- -5'
6325 5' -43.1 NC_001846.1 + 6866 0.66 0.997323
Target:  5'- -cUCAUcUCUUAACAACaACAACuuaGCg -3'
miRNA:   3'- gaAGUA-AGAGUUGUUGgUGUUGua-CG- -5'
6325 5' -43.1 NC_001846.1 + 19903 0.66 0.997269
Target:  5'- ------aUUCGACAGCCACAuuaguggggaaugGCGUGUu -3'
miRNA:   3'- gaaguaaGAGUUGUUGGUGU-------------UGUACG- -5'
6325 5' -43.1 NC_001846.1 + 27829 0.67 0.996041
Target:  5'- aCUUCuuaaaaCAACAugaGCCACAACcuGUGCa -3'
miRNA:   3'- -GAAGuaaga-GUUGU---UGGUGUUG--UACG- -5'
6325 5' -43.1 NC_001846.1 + 150 0.67 0.994294
Target:  5'- uUUCGUUCUCu---GCCAgUGACGUGUc -3'
miRNA:   3'- gAAGUAAGAGuuguUGGU-GUUGUACG- -5'
6325 5' -43.1 NC_001846.1 + 26314 0.67 0.991972
Target:  5'- --cCAUaCUCAAcCAACUGCugccuGCAUGCa -3'
miRNA:   3'- gaaGUAaGAGUU-GUUGGUGu----UGUACG- -5'
6325 5' -43.1 NC_001846.1 + 5239 0.69 0.980359
Target:  5'- uUUgGUUUUgAugAACCACAAC-UGCu -3'
miRNA:   3'- gAAgUAAGAgUugUUGGUGUUGuACG- -5'
6325 5' -43.1 NC_001846.1 + 2691 0.72 0.912436
Target:  5'- -gUCGUUaUCAACAACCACAGgGUa- -3'
miRNA:   3'- gaAGUAAgAGUUGUUGGUGUUgUAcg -5'
6325 5' -43.1 NC_001846.1 + 21783 0.74 0.833112
Target:  5'- --cCAUUUUC-ACAGCCACGACAaGUa -3'
miRNA:   3'- gaaGUAAGAGuUGUUGGUGUUGUaCG- -5'
6325 5' -43.1 NC_001846.1 + 8097 1.16 0.003801
Target:  5'- gCUUCAUUCUCAACAACCACAACAUGCg -3'
miRNA:   3'- -GAAGUAAGAGUUGUUGGUGUUGUACG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.