miRNA display CGI


Results 1 - 20 of 521 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6346 3' -60.6 NC_001847.1 + 128204 0.66 0.744835
Target:  5'- cCG-CGCCuggcCCGUCUUCGUGuGcaccuucaacaGCGCGCa -3'
miRNA:   3'- -GCaGUGGc---GGCAGAAGCGC-C-----------CGCGCG- -5'
6346 3' -60.6 NC_001847.1 + 81172 0.66 0.744835
Target:  5'- cCG-CGCCGCuCGgagggC-UCGCGgcggcgccagccGGCGCGCg -3'
miRNA:   3'- -GCaGUGGCG-GCa----GaAGCGC------------CCGCGCG- -5'
6346 3' -60.6 NC_001847.1 + 40199 0.66 0.744835
Target:  5'- ---gGCCGCCGaugCggUCGUGGGCGUc- -3'
miRNA:   3'- gcagUGGCGGCa--Ga-AGCGCCCGCGcg -5'
6346 3' -60.6 NC_001847.1 + 5192 0.66 0.744835
Target:  5'- --aCAgCGCCG-CgagCGCGGcaaGCGCGCc -3'
miRNA:   3'- gcaGUgGCGGCaGaa-GCGCC---CGCGCG- -5'
6346 3' -60.6 NC_001847.1 + 28329 0.66 0.744835
Target:  5'- gCGU-GCCGCuCGcCg--GCGGGCaGCGCg -3'
miRNA:   3'- -GCAgUGGCG-GCaGaagCGCCCG-CGCG- -5'
6346 3' -60.6 NC_001847.1 + 77704 0.66 0.744835
Target:  5'- gCGUgCGCgCGCgCG-CUggugCGCGcuuGGCGCGCg -3'
miRNA:   3'- -GCA-GUG-GCG-GCaGAa---GCGC---CCGCGCG- -5'
6346 3' -60.6 NC_001847.1 + 56062 0.66 0.744835
Target:  5'- aGgCGCCGCUGaagcCUgCGCGGcugaGCGCGCc -3'
miRNA:   3'- gCaGUGGCGGCa---GAaGCGCC----CGCGCG- -5'
6346 3' -60.6 NC_001847.1 + 15557 0.66 0.744835
Target:  5'- gCG-CGCgGCCGUCgggcCGCGGcCGcCGCu -3'
miRNA:   3'- -GCaGUGgCGGCAGaa--GCGCCcGC-GCG- -5'
6346 3' -60.6 NC_001847.1 + 97594 0.66 0.744835
Target:  5'- gCGUCuuccgaaggGCCGcCCGUCgcgugcaccgUCGaGGGUGCGUc -3'
miRNA:   3'- -GCAG---------UGGC-GGCAGa---------AGCgCCCGCGCG- -5'
6346 3' -60.6 NC_001847.1 + 11526 0.66 0.744835
Target:  5'- aCGUaGCCGCCGggugCUgcguUCGCgucuGGaGUGCGCc -3'
miRNA:   3'- -GCAgUGGCGGCa---GA----AGCG----CC-CGCGCG- -5'
6346 3' -60.6 NC_001847.1 + 92733 0.66 0.744835
Target:  5'- cCGgCGCCGUCGUCa--GCGcGCGCGa -3'
miRNA:   3'- -GCaGUGGCGGCAGaagCGCcCGCGCg -5'
6346 3' -60.6 NC_001847.1 + 92187 0.66 0.744835
Target:  5'- --aCGCCGCCGUCcgUGCGGaaGCa- -3'
miRNA:   3'- gcaGUGGCGGCAGaaGCGCCcgCGcg -5'
6346 3' -60.6 NC_001847.1 + 71695 0.66 0.744835
Target:  5'- --cCGCCGCguccgCGUCUgCGCGG-UGCGCc -3'
miRNA:   3'- gcaGUGGCG-----GCAGAaGCGCCcGCGCG- -5'
6346 3' -60.6 NC_001847.1 + 60361 0.66 0.744835
Target:  5'- cCGUCGaacgUGCacacCUUCGCcaggGGGCGCGCg -3'
miRNA:   3'- -GCAGUg---GCGgca-GAAGCG----CCCGCGCG- -5'
6346 3' -60.6 NC_001847.1 + 48415 0.66 0.744835
Target:  5'- --aCAUCGCCcUC--CGCGGGcCGCGUg -3'
miRNA:   3'- gcaGUGGCGGcAGaaGCGCCC-GCGCG- -5'
6346 3' -60.6 NC_001847.1 + 34092 0.66 0.744835
Target:  5'- cCGggGCCgGCC-UCg--GCGGGUGCGCa -3'
miRNA:   3'- -GCagUGG-CGGcAGaagCGCCCGCGCG- -5'
6346 3' -60.6 NC_001847.1 + 48147 0.66 0.744835
Target:  5'- gGUaACCGCCGg----GCcGGCGCGCg -3'
miRNA:   3'- gCAgUGGCGGCagaagCGcCCGCGCG- -5'
6346 3' -60.6 NC_001847.1 + 2979 0.66 0.735448
Target:  5'- aG-CGCCGCCGgggcCggCGCuGGagccGCGCGCg -3'
miRNA:   3'- gCaGUGGCGGCa---GaaGCG-CC----CGCGCG- -5'
6346 3' -60.6 NC_001847.1 + 59376 0.66 0.735448
Target:  5'- --cCGCgGCCGUgUUCacccgcgcgGCGGGCGaGCa -3'
miRNA:   3'- gcaGUGgCGGCAgAAG---------CGCCCGCgCG- -5'
6346 3' -60.6 NC_001847.1 + 83972 0.66 0.735448
Target:  5'- cCGUCGCCgggcaaacgGCCGUCgaguaCGGGUccaGCGCc -3'
miRNA:   3'- -GCAGUGG---------CGGCAGaagc-GCCCG---CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.