Results 21 - 40 of 601 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6356 | 3' | -61.4 | NC_001847.1 | + | 27456 | 0.66 | 0.674877 |
Target: 5'- gGGGCCC---UGCCGCUg--CCCGcCGCc -3' miRNA: 3'- -UCCGGGcgcAUGGCGAgaaGGGC-GCG- -5' |
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6356 | 3' | -61.4 | NC_001847.1 | + | 37109 | 0.66 | 0.674877 |
Target: 5'- cGGCCCGCugGUGuucaUGCUCUggggCGCGCa -3' miRNA: 3'- uCCGGGCG--CAUg---GCGAGAagg-GCGCG- -5' |
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6356 | 3' | -61.4 | NC_001847.1 | + | 61433 | 0.66 | 0.674877 |
Target: 5'- -cGCCCGCG-GCCGCgccgCCgGgCGCg -3' miRNA: 3'- ucCGGGCGCaUGGCGagaaGGgC-GCG- -5' |
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6356 | 3' | -61.4 | NC_001847.1 | + | 116495 | 0.66 | 0.673893 |
Target: 5'- cGGGCaCgGCGUcgcgcucGCCGagcacCUCUgCCUGCGCu -3' miRNA: 3'- -UCCG-GgCGCA-------UGGC-----GAGAaGGGCGCG- -5' |
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6356 | 3' | -61.4 | NC_001847.1 | + | 70904 | 0.66 | 0.673893 |
Target: 5'- aGGGCCCGcCGUGgccucccCCGCcaUCU-CuaGCGCg -3' miRNA: 3'- -UCCGGGC-GCAU-------GGCG--AGAaGggCGCG- -5' |
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6356 | 3' | -61.4 | NC_001847.1 | + | 112852 | 0.66 | 0.671924 |
Target: 5'- cGGCuCCGCGUucgucacggccgacACgCGCgcgCUgCgCCGCGCg -3' miRNA: 3'- uCCG-GGCGCA--------------UG-GCGa--GAaG-GGCGCG- -5' |
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6356 | 3' | -61.4 | NC_001847.1 | + | 10039 | 0.66 | 0.671924 |
Target: 5'- cGGCuCCGCGUucgucacggccgacACgCGCgcgCUgCgCCGCGCg -3' miRNA: 3'- uCCG-GGCGCA--------------UG-GCGa--GAaG-GGCGCG- -5' |
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6356 | 3' | -61.4 | NC_001847.1 | + | 66639 | 0.66 | 0.671924 |
Target: 5'- cGGCgggggCGCGUuuguggacugccugGCgCGCUUgcgCCCGCGCg -3' miRNA: 3'- uCCGg----GCGCA--------------UG-GCGAGaa-GGGCGCG- -5' |
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6356 | 3' | -61.4 | NC_001847.1 | + | 9640 | 0.66 | 0.670939 |
Target: 5'- -cGCCgGCccGCCGCUCgagcagccgggcgUCCuCGCGCc -3' miRNA: 3'- ucCGGgCGcaUGGCGAGa------------AGG-GCGCG- -5' |
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6356 | 3' | -61.4 | NC_001847.1 | + | 58061 | 0.66 | 0.668968 |
Target: 5'- cGGGCCgccgauuggcgcgcgCGCGcGCCGCagCgggUgCCGCGCc -3' miRNA: 3'- -UCCGG---------------GCGCaUGGCGa-Ga--AgGGCGCG- -5' |
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6356 | 3' | -61.4 | NC_001847.1 | + | 70714 | 0.66 | 0.666009 |
Target: 5'- gGGcGCCCGCGgcgagcgcgaggacaGCCGCUgccaauagCgCCGCGCa -3' miRNA: 3'- -UC-CGGGCGCa--------------UGGCGAgaa-----G-GGCGCG- -5' |
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6356 | 3' | -61.4 | NC_001847.1 | + | 10213 | 0.66 | 0.665023 |
Target: 5'- cGGGCCCaggGCGcgcCCGCUgUcgCCCccgGCGCg -3' miRNA: 3'- -UCCGGG---CGCau-GGCGAgAa-GGG---CGCG- -5' |
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6356 | 3' | -61.4 | NC_001847.1 | + | 59711 | 0.66 | 0.665023 |
Target: 5'- cAGGaCuCCGCGgucgcgauCgCGCUCggcgUCCgGCGCg -3' miRNA: 3'- -UCC-G-GGCGCau------G-GCGAGa---AGGgCGCG- -5' |
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6356 | 3' | -61.4 | NC_001847.1 | + | 31108 | 0.66 | 0.665023 |
Target: 5'- uGGCCUGCGggcgGCgCGCgCUggagCUgGCGCc -3' miRNA: 3'- uCCGGGCGCa---UG-GCGaGAa---GGgCGCG- -5' |
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6356 | 3' | -61.4 | NC_001847.1 | + | 15204 | 0.66 | 0.665023 |
Target: 5'- cGGaCCCGC--ACCGCg---CCgGCGCg -3' miRNA: 3'- uCC-GGGCGcaUGGCGagaaGGgCGCG- -5' |
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6356 | 3' | -61.4 | NC_001847.1 | + | 130067 | 0.66 | 0.665023 |
Target: 5'- cGGCgaCGCGUcGCCGUcCUgggCCGCGCc -3' miRNA: 3'- uCCGg-GCGCA-UGGCGaGAag-GGCGCG- -5' |
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6356 | 3' | -61.4 | NC_001847.1 | + | 108253 | 0.66 | 0.665023 |
Target: 5'- cAGGCCaugaucCGC-UGCCGCgcgUUCCCGCa- -3' miRNA: 3'- -UCCGG------GCGcAUGGCGag-AAGGGCGcg -5' |
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6356 | 3' | -61.4 | NC_001847.1 | + | 65909 | 0.66 | 0.665023 |
Target: 5'- uAGGCCaGCGuUGCCGCggcgCCgGCGa -3' miRNA: 3'- -UCCGGgCGC-AUGGCGagaaGGgCGCg -5' |
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6356 | 3' | -61.4 | NC_001847.1 | + | 32035 | 0.66 | 0.665023 |
Target: 5'- gGGGCgCGgGgACgGCg---CCCGCGCg -3' miRNA: 3'- -UCCGgGCgCaUGgCGagaaGGGCGCG- -5' |
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6356 | 3' | -61.4 | NC_001847.1 | + | 66919 | 0.66 | 0.665023 |
Target: 5'- cGuGCuuGCGgccccGCCGCgg--CCCGUGCg -3' miRNA: 3'- uC-CGggCGCa----UGGCGagaaGGGCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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