miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
670 3' -52.5 AC_000018.1 + 7747 0.66 0.740442
Target:  5'- ---aUUAGCuGCuUGCCAAagGACCCCAu -3'
miRNA:   3'- cgcaAAUCG-CG-AUGGUUg-CUGGGGUu -5'
670 3' -52.5 AC_000018.1 + 24908 0.67 0.636938
Target:  5'- aGUGUUU-GCGCcGCUuuuucacCGACCCCGAg -3'
miRNA:   3'- -CGCAAAuCGCGaUGGuu-----GCUGGGGUU- -5'
670 3' -52.5 AC_000018.1 + 7638 0.68 0.567099
Target:  5'- -gGUUUGGggguccUGCcGCCAGCGAUCCCAc -3'
miRNA:   3'- cgCAAAUC------GCGaUGGUUGCUGGGGUu -5'
670 3' -52.5 AC_000018.1 + 8340 0.71 0.415211
Target:  5'- cCGUgccccuugGGCGCUACCAcCGugCCCu- -3'
miRNA:   3'- cGCAaa------UCGCGAUGGUuGCugGGGuu -5'
670 3' -52.5 AC_000018.1 + 13624 0.71 0.435448
Target:  5'- aCGgcUGGUGCUGCCGcgacCGugCCCGAa -3'
miRNA:   3'- cGCaaAUCGCGAUGGUu---GCugGGGUU- -5'
670 3' -52.5 AC_000018.1 + 4527 0.72 0.367239
Target:  5'- cCGUgc--CGCUGCCcACGGCCCCAu -3'
miRNA:   3'- cGCAaaucGCGAUGGuUGCUGGGGUu -5'
670 3' -52.5 AC_000018.1 + 5123 0.73 0.331699
Target:  5'- gGCGUccAGCGCUGCCAGggucCGAUCCUu- -3'
miRNA:   3'- -CGCAaaUCGCGAUGGUU----GCUGGGGuu -5'
670 3' -52.5 AC_000018.1 + 12758 1.09 0.00099
Target:  5'- aGCGUUUAGCGCUACCAACGACCCCAAg -3'
miRNA:   3'- -CGCAAAUCGCGAUGGUUGCUGGGGUU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.