miRNA display CGI


Results 1 - 20 of 249 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6727 5' -56.3 NC_001875.2 + 16113 0.66 0.885412
Target:  5'- -gGCCgGGCAggAUGCGgucaaagugcugGCG-CCCCGCCa -3'
miRNA:   3'- ugCGG-UCGU--UAUGU------------UGCuGGGGCGGc -5'
6727 5' -56.3 NC_001875.2 + 85762 0.66 0.885412
Target:  5'- gGCGUCuuuGaCGAUG-AACGACgCCGCCGu -3'
miRNA:   3'- -UGCGGu--C-GUUAUgUUGCUGgGGCGGC- -5'
6727 5' -56.3 NC_001875.2 + 37429 0.66 0.885412
Target:  5'- -gGCCGuggcGCAGU-CGGCGGCCaaauagCCGCCGc -3'
miRNA:   3'- ugCGGU----CGUUAuGUUGCUGG------GGCGGC- -5'
6727 5' -56.3 NC_001875.2 + 98122 0.66 0.885412
Target:  5'- -gGCCGGCAGaACGGCGuuucggugGCCgCGUCGu -3'
miRNA:   3'- ugCGGUCGUUaUGUUGC--------UGGgGCGGC- -5'
6727 5' -56.3 NC_001875.2 + 44626 0.66 0.885412
Target:  5'- cGCGCCGguGCAcgACuugGCGcACUgCGCCGa -3'
miRNA:   3'- -UGCGGU--CGUuaUGu--UGC-UGGgGCGGC- -5'
6727 5' -56.3 NC_001875.2 + 54320 0.66 0.885412
Target:  5'- uGCGCCAGCGG-GCAGCuuuacucuauCCCCGUg- -3'
miRNA:   3'- -UGCGGUCGUUaUGUUGcu--------GGGGCGgc -5'
6727 5' -56.3 NC_001875.2 + 31802 0.66 0.885412
Target:  5'- cGCGuCCGGCAcgACGaacGCGGCaagCGCCGc -3'
miRNA:   3'- -UGC-GGUCGUuaUGU---UGCUGgg-GCGGC- -5'
6727 5' -56.3 NC_001875.2 + 71647 0.66 0.884715
Target:  5'- cCGCCGGCGcaAUuCAACGAagcgcuguauuugUgCCGCCGa -3'
miRNA:   3'- uGCGGUCGU--UAuGUUGCU-------------GgGGCGGC- -5'
6727 5' -56.3 NC_001875.2 + 43480 0.66 0.878346
Target:  5'- cGCGgCGGCAAccACGcCGACCCgCGCgCGc -3'
miRNA:   3'- -UGCgGUCGUUa-UGUuGCUGGG-GCG-GC- -5'
6727 5' -56.3 NC_001875.2 + 106173 0.66 0.878346
Target:  5'- cCGCCgAGCAcUGCAACG-CCCagaugaaGUCGg -3'
miRNA:   3'- uGCGG-UCGUuAUGUUGCuGGGg------CGGC- -5'
6727 5' -56.3 NC_001875.2 + 115911 0.66 0.878346
Target:  5'- gGCGCCGGUuu--CGGCGcACgCCGCUa -3'
miRNA:   3'- -UGCGGUCGuuauGUUGC-UGgGGCGGc -5'
6727 5' -56.3 NC_001875.2 + 54856 0.66 0.878346
Target:  5'- uCGCCAgGCAGUACAAauGCUuuGCgGa -3'
miRNA:   3'- uGCGGU-CGUUAUGUUgcUGGggCGgC- -5'
6727 5' -56.3 NC_001875.2 + 45093 0.66 0.878346
Target:  5'- cGCGCCGGCGAa--AACGaggcgcugaaGCgCCGCCu -3'
miRNA:   3'- -UGCGGUCGUUaugUUGC----------UGgGGCGGc -5'
6727 5' -56.3 NC_001875.2 + 122968 0.66 0.878346
Target:  5'- gACGCCuuGCGuUugGAgccgcCGGCCgCGCCGg -3'
miRNA:   3'- -UGCGGu-CGUuAugUU-----GCUGGgGCGGC- -5'
6727 5' -56.3 NC_001875.2 + 109900 0.66 0.878346
Target:  5'- cGCGCC-GCAGaACGuuuaACG-CCCCGCUu -3'
miRNA:   3'- -UGCGGuCGUUaUGU----UGCuGGGGCGGc -5'
6727 5' -56.3 NC_001875.2 + 41805 0.66 0.878346
Target:  5'- cCGCCGGCAcgcGCGcCGGCgCCGCgGc -3'
miRNA:   3'- uGCGGUCGUua-UGUuGCUGgGGCGgC- -5'
6727 5' -56.3 NC_001875.2 + 40070 0.66 0.878346
Target:  5'- cACGCC-GCAcUACGACGAggCCGCgGc -3'
miRNA:   3'- -UGCGGuCGUuAUGUUGCUggGGCGgC- -5'
6727 5' -56.3 NC_001875.2 + 10394 0.66 0.878346
Target:  5'- aACGCCGccGCGccGUGgcGCGGCaCCCGCUGc -3'
miRNA:   3'- -UGCGGU--CGU--UAUguUGCUG-GGGCGGC- -5'
6727 5' -56.3 NC_001875.2 + 15517 0.66 0.878346
Target:  5'- cACGcCCAGCAAgauUACAACauGACCuuGaCUGa -3'
miRNA:   3'- -UGC-GGUCGUU---AUGUUG--CUGGggC-GGC- -5'
6727 5' -56.3 NC_001875.2 + 36768 0.66 0.877627
Target:  5'- cGCGaUCGGUggUGCAagggcgacgcgcaGCGGCUgCGCCGc -3'
miRNA:   3'- -UGC-GGUCGuuAUGU-------------UGCUGGgGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.