miRNA display CGI


Results 1 - 20 of 249 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6727 5' -56.3 NC_001875.2 + 84361 0.71 0.586892
Target:  5'- uGCGCCGGUAgGUGC-GCGGCC-UGCCGg -3'
miRNA:   3'- -UGCGGUCGU-UAUGuUGCUGGgGCGGC- -5'
6727 5' -56.3 NC_001875.2 + 128750 0.73 0.496947
Target:  5'- cGCGCCccGGCGcGUGCAcgccguggGCGACCCCGgCGc -3'
miRNA:   3'- -UGCGG--UCGU-UAUGU--------UGCUGGGGCgGC- -5'
6727 5' -56.3 NC_001875.2 + 37503 0.73 0.50667
Target:  5'- -gGCCGGCGAcggugcggACGACGcGCCCUGCCu -3'
miRNA:   3'- ugCGGUCGUUa-------UGUUGC-UGGGGCGGc -5'
6727 5' -56.3 NC_001875.2 + 31679 0.73 0.516473
Target:  5'- -gGCCAGCGugccgGCGugGACCgCCGCUu -3'
miRNA:   3'- ugCGGUCGUua---UGUugCUGG-GGCGGc -5'
6727 5' -56.3 NC_001875.2 + 7610 0.72 0.526351
Target:  5'- -gGCCGGCAGUGCAAggacacguacacCGACCUgcgcacacaCGCCGa -3'
miRNA:   3'- ugCGGUCGUUAUGUU------------GCUGGG---------GCGGC- -5'
6727 5' -56.3 NC_001875.2 + 18481 0.72 0.533308
Target:  5'- uGCGCC-GCGccGCAGCGACgcagccgcgcccgaCCCGCCGc -3'
miRNA:   3'- -UGCGGuCGUuaUGUUGCUG--------------GGGCGGC- -5'
6727 5' -56.3 NC_001875.2 + 85310 0.72 0.536299
Target:  5'- gGCGCgGGCAuUGCcGCGggcgcucucGCCCCGCCc -3'
miRNA:   3'- -UGCGgUCGUuAUGuUGC---------UGGGGCGGc -5'
6727 5' -56.3 NC_001875.2 + 75258 0.72 0.566509
Target:  5'- gGCGUCGGCGAUgGCGGCGGCgUCGgCGa -3'
miRNA:   3'- -UGCGGUCGUUA-UGUUGCUGgGGCgGC- -5'
6727 5' -56.3 NC_001875.2 + 5278 0.71 0.586892
Target:  5'- cUGCCAcGCGAUGgcCGACGugCCCGCg- -3'
miRNA:   3'- uGCGGU-CGUUAU--GUUGCugGGGCGgc -5'
6727 5' -56.3 NC_001875.2 + 5847 0.73 0.486351
Target:  5'- cGCGCCcgcguAGCAGUGCAccagcacGCGuuuGCCCuCGCCGa -3'
miRNA:   3'- -UGCGG-----UCGUUAUGU-------UGC---UGGG-GCGGC- -5'
6727 5' -56.3 NC_001875.2 + 48233 0.73 0.486351
Target:  5'- cGCGUCAauugcuGCAAguugagcUACGGCGgcGCCCCGCCGg -3'
miRNA:   3'- -UGCGGU------CGUU-------AUGUUGC--UGGGGCGGC- -5'
6727 5' -56.3 NC_001875.2 + 119976 0.73 0.476811
Target:  5'- cGCGCacaccgcaaaaaaCAGCAAauagcaugauuUACAcCGACCCCGCCa -3'
miRNA:   3'- -UGCG-------------GUCGUU-----------AUGUuGCUGGGGCGGc -5'
6727 5' -56.3 NC_001875.2 + 23093 0.78 0.275676
Target:  5'- cGCGCC-GC-GUGCAGCuGCCCCGCCa -3'
miRNA:   3'- -UGCGGuCGuUAUGUUGcUGGGGCGGc -5'
6727 5' -56.3 NC_001875.2 + 37595 0.77 0.289012
Target:  5'- aGCGCCGcggccggccGCAcgGCGGCGugCUCGCCGa -3'
miRNA:   3'- -UGCGGU---------CGUuaUGUUGCugGGGCGGC- -5'
6727 5' -56.3 NC_001875.2 + 32804 0.75 0.371353
Target:  5'- cGCGCCGGCAAgcucgGCgAACGGCgCCGCUu -3'
miRNA:   3'- -UGCGGUCGUUa----UG-UUGCUGgGGCGGc -5'
6727 5' -56.3 NC_001875.2 + 39117 0.75 0.405014
Target:  5'- cGCGCUccauGGCG--GCGACGACCCUGaCCGg -3'
miRNA:   3'- -UGCGG----UCGUuaUGUUGCUGGGGC-GGC- -5'
6727 5' -56.3 NC_001875.2 + 7360 0.74 0.413725
Target:  5'- -aGCCuGCGGUGCA--GugCCCGCCGg -3'
miRNA:   3'- ugCGGuCGUUAUGUugCugGGGCGGC- -5'
6727 5' -56.3 NC_001875.2 + 15950 0.74 0.413725
Target:  5'- gGCGCCAGCAcuUugAcCGAUCCUGCCc -3'
miRNA:   3'- -UGCGGUCGUu-AugUuGCUGGGGCGGc -5'
6727 5' -56.3 NC_001875.2 + 85825 0.74 0.42255
Target:  5'- gGCGCCAGCugcguggGCGGcCGAUCCUGCUGu -3'
miRNA:   3'- -UGCGGUCGuua----UGUU-GCUGGGGCGGC- -5'
6727 5' -56.3 NC_001875.2 + 85675 0.74 0.440535
Target:  5'- cGCGCCGGCc-UGCAGCGACUCgaccagcuugcgCGCCGc -3'
miRNA:   3'- -UGCGGUCGuuAUGUUGCUGGG------------GCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.