miRNA display CGI


Results 21 - 40 of 399 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6741 3' -63.9 NC_001875.2 + 50770 0.66 0.566216
Target:  5'- aCGCGGcucuUCuCGUcGCGGCGCAccauuaCGCCg -3'
miRNA:   3'- -GCGCC----AGcGCGcCGCCGCGUug----GCGG- -5'
6741 3' -63.9 NC_001875.2 + 38285 0.66 0.566216
Target:  5'- gCGCGcGUacgaCGaCGCGGUGGCGag--CGCCg -3'
miRNA:   3'- -GCGC-CA----GC-GCGCCGCCGCguugGCGG- -5'
6741 3' -63.9 NC_001875.2 + 74139 0.66 0.566216
Target:  5'- aGCuGGaguUCgaggGCGCGGCGccCGCcGCCGCCa -3'
miRNA:   3'- gCG-CC---AG----CGCGCCGCc-GCGuUGGCGG- -5'
6741 3' -63.9 NC_001875.2 + 47016 0.66 0.565261
Target:  5'- uGCuGGUggaGCGCGGCGacaacauccaaaaGuUGCAGCCGCa -3'
miRNA:   3'- gCG-CCAg--CGCGCCGC-------------C-GCGUUGGCGg -5'
6741 3' -63.9 NC_001875.2 + 13749 0.66 0.565261
Target:  5'- gCGCGGcgUCGCGCacaaaguGGUGGCaGCAGucuCCGUn -3'
miRNA:   3'- -GCGCC--AGCGCG-------CCGCCG-CGUU---GGCGg -5'
6741 3' -63.9 NC_001875.2 + 94786 0.66 0.55669
Target:  5'- gCGUGGcCGCGUccGcGCGcGUGCAG-CGCCg -3'
miRNA:   3'- -GCGCCaGCGCG--C-CGC-CGCGUUgGCGG- -5'
6741 3' -63.9 NC_001875.2 + 72725 0.66 0.55669
Target:  5'- uGCGcUUGCGCGuCGGCcaGCGacGCCGUCa -3'
miRNA:   3'- gCGCcAGCGCGCcGCCG--CGU--UGGCGG- -5'
6741 3' -63.9 NC_001875.2 + 91162 0.66 0.55669
Target:  5'- uGaCGGUCGCGCaauuGGaCGgaaugucgccGCGCAACaGCCg -3'
miRNA:   3'- gC-GCCAGCGCG----CC-GC----------CGCGUUGgCGG- -5'
6741 3' -63.9 NC_001875.2 + 119653 0.66 0.55669
Target:  5'- -aCGGccaggcaaaccUCG-GCGGCGGCGCAcaGCgGCUu -3'
miRNA:   3'- gcGCC-----------AGCgCGCCGCCGCGU--UGgCGG- -5'
6741 3' -63.9 NC_001875.2 + 66066 0.66 0.55669
Target:  5'- aCGCcG-CGCGCGuGCucGCcCAGCCGCCg -3'
miRNA:   3'- -GCGcCaGCGCGC-CGc-CGcGUUGGCGG- -5'
6741 3' -63.9 NC_001875.2 + 18651 0.66 0.55669
Target:  5'- gGUGGgcacgucgcaGCGCGucaCGGUGCGGCUGCUg -3'
miRNA:   3'- gCGCCag--------CGCGCc--GCCGCGUUGGCGG- -5'
6741 3' -63.9 NC_001875.2 + 33226 0.66 0.55574
Target:  5'- gCGCGGgcUCGCcggGCGccguuucggcGCGGCGCuccgaguugcaaaAGCCGUCg -3'
miRNA:   3'- -GCGCC--AGCG---CGC----------CGCCGCG-------------UUGGCGG- -5'
6741 3' -63.9 NC_001875.2 + 9131 0.66 0.548157
Target:  5'- cCGUGGacUCGCGCGccaguucgguguccaCGGCGCA--CGCCa -3'
miRNA:   3'- -GCGCC--AGCGCGCc--------------GCCGCGUugGCGG- -5'
6741 3' -63.9 NC_001875.2 + 57679 0.66 0.547211
Target:  5'- aCGCGuccaaGCugGCGGCGGCGgGcGCCGCg -3'
miRNA:   3'- -GCGCcag--CG--CGCCGCCGCgU-UGGCGg -5'
6741 3' -63.9 NC_001875.2 + 121884 0.66 0.547211
Target:  5'- aCGUGGUgGCuauaagcCGGCGuGgGCAgcACCGCUa -3'
miRNA:   3'- -GCGCCAgCGc------GCCGC-CgCGU--UGGCGG- -5'
6741 3' -63.9 NC_001875.2 + 110279 0.66 0.547211
Target:  5'- cCGCGGagCGCGCgGGCuGCcCcgUCGCCg -3'
miRNA:   3'- -GCGCCa-GCGCG-CCGcCGcGuuGGCGG- -5'
6741 3' -63.9 NC_001875.2 + 34350 0.66 0.547211
Target:  5'- aGCaagCGCGCGGCGcaagagaCGCAguuGCUGCCg -3'
miRNA:   3'- gCGccaGCGCGCCGCc------GCGU---UGGCGG- -5'
6741 3' -63.9 NC_001875.2 + 113085 0.66 0.547211
Target:  5'- gGCGa-CGCGCGuCaGCGCcuuAGCCGCCg -3'
miRNA:   3'- gCGCcaGCGCGCcGcCGCG---UUGGCGG- -5'
6741 3' -63.9 NC_001875.2 + 100731 0.66 0.547211
Target:  5'- uGCGG-CGCGCGGCa-CGCGuUCGUUa -3'
miRNA:   3'- gCGCCaGCGCGCCGccGCGUuGGCGG- -5'
6741 3' -63.9 NC_001875.2 + 85248 0.66 0.547211
Target:  5'- gCGCGGguucCGCGCu-CGGCGCGGacacgagCGCCc -3'
miRNA:   3'- -GCGCCa---GCGCGccGCCGCGUUg------GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.