Results 1 - 20 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6744 | 3' | -52.8 | NC_001875.2 | + | 113231 | 1.09 | 0.004212 |
Target: 5'- gCUGCGCCUUUGCUUGCAAUACCGCCUg -3' miRNA: 3'- -GACGCGGAAACGAACGUUAUGGCGGA- -5' |
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6744 | 3' | -52.8 | NC_001875.2 | + | 121174 | 0.74 | 0.565889 |
Target: 5'- -aGCGCCUgcGCcaagUGCAGUccGCCGCCc -3' miRNA: 3'- gaCGCGGAaaCGa---ACGUUA--UGGCGGa -5' |
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6744 | 3' | -52.8 | NC_001875.2 | + | 41782 | 0.73 | 0.640758 |
Target: 5'- cCUGaCGCCcaUGCUUGUGAUuuCCGCCg -3' miRNA: 3'- -GAC-GCGGaaACGAACGUUAu-GGCGGa -5' |
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6744 | 3' | -52.8 | NC_001875.2 | + | 92513 | 0.72 | 0.715211 |
Target: 5'- gCUGCGCCUgcaGCgcGCGcacGCCGCCg -3' miRNA: 3'- -GACGCGGAaa-CGaaCGUua-UGGCGGa -5' |
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6744 | 3' | -52.8 | NC_001875.2 | + | 72681 | 0.71 | 0.76625 |
Target: 5'- uCUGUGCCaucaccagguUUUGCUccGCGGUGCgCGCCg -3' miRNA: 3'- -GACGCGG----------AAACGAa-CGUUAUG-GCGGa -5' |
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6744 | 3' | -52.8 | NC_001875.2 | + | 63273 | 0.71 | 0.76625 |
Target: 5'- -gGCGCCac-GCggUGCGcgACCGCCg -3' miRNA: 3'- gaCGCGGaaaCGa-ACGUuaUGGCGGa -5' |
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6744 | 3' | -52.8 | NC_001875.2 | + | 50149 | 0.71 | 0.76625 |
Target: 5'- -aGCGCCUggcGCgccuucUGCAugGCCGCCUc -3' miRNA: 3'- gaCGCGGAaa-CGa-----ACGUuaUGGCGGA- -5' |
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6744 | 3' | -52.8 | NC_001875.2 | + | 77075 | 0.71 | 0.76625 |
Target: 5'- uUGCGCCguccugUUUGCgcugGCGGUGCCGgCg -3' miRNA: 3'- gACGCGG------AAACGaa--CGUUAUGGCgGa -5' |
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6744 | 3' | -52.8 | NC_001875.2 | + | 117382 | 0.7 | 0.785821 |
Target: 5'- -gGCGCCga-GCUUGCug-GCCGCg- -3' miRNA: 3'- gaCGCGGaaaCGAACGuuaUGGCGga -5' |
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6744 | 3' | -52.8 | NC_001875.2 | + | 29538 | 0.7 | 0.814009 |
Target: 5'- uCUGCGCCUU--CUUGCG--GCgCGCCa -3' miRNA: 3'- -GACGCGGAAacGAACGUuaUG-GCGGa -5' |
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6744 | 3' | -52.8 | NC_001875.2 | + | 39935 | 0.69 | 0.857234 |
Target: 5'- cCUGCGCgcaaUUUGCgcGCGGUugcccgacccGCCGCCg -3' miRNA: 3'- -GACGCGg---AAACGaaCGUUA----------UGGCGGa -5' |
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6744 | 3' | -52.8 | NC_001875.2 | + | 84359 | 0.69 | 0.865237 |
Target: 5'- gCUGCGCCg--GUaggUGCGcgGCCuGCCg -3' miRNA: 3'- -GACGCGGaaaCGa--ACGUuaUGG-CGGa -5' |
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6744 | 3' | -52.8 | NC_001875.2 | + | 62012 | 0.69 | 0.865237 |
Target: 5'- uUGCGCaaaaUUGCUUGUAAU-CCGCg- -3' miRNA: 3'- gACGCGga--AACGAACGUUAuGGCGga -5' |
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6744 | 3' | -52.8 | NC_001875.2 | + | 86928 | 0.68 | 0.87301 |
Target: 5'- -aGCGCCgccuagagUGCgaggGCGA-GCCGCCa -3' miRNA: 3'- gaCGCGGaa------ACGaa--CGUUaUGGCGGa -5' |
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6744 | 3' | -52.8 | NC_001875.2 | + | 51896 | 0.68 | 0.87301 |
Target: 5'- -cGUGCCUgaacgGCgugaacgagGUGAUGCCGCCg -3' miRNA: 3'- gaCGCGGAaa---CGaa-------CGUUAUGGCGGa -5' |
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6744 | 3' | -52.8 | NC_001875.2 | + | 79107 | 0.68 | 0.887835 |
Target: 5'- -cGCGCaaaUGCUgGCGAU-CCGCCg -3' miRNA: 3'- gaCGCGgaaACGAaCGUUAuGGCGGa -5' |
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6744 | 3' | -52.8 | NC_001875.2 | + | 119874 | 0.68 | 0.894877 |
Target: 5'- -cGuCGCCagUGCUucUGCAAcgcGCCGCCg -3' miRNA: 3'- gaC-GCGGaaACGA--ACGUUa--UGGCGGa -5' |
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6744 | 3' | -52.8 | NC_001875.2 | + | 52302 | 0.68 | 0.894877 |
Target: 5'- gCUG-GCCUUUGCgcugugGCGcAUACaCGCCa -3' miRNA: 3'- -GACgCGGAAACGaa----CGU-UAUG-GCGGa -5' |
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6744 | 3' | -52.8 | NC_001875.2 | + | 114721 | 0.68 | 0.894877 |
Target: 5'- -cGaCGCCaaaUGCUUGCuuaugcgGCCGCCa -3' miRNA: 3'- gaC-GCGGaa-ACGAACGuua----UGGCGGa -5' |
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6744 | 3' | -52.8 | NC_001875.2 | + | 7349 | 0.68 | 0.901667 |
Target: 5'- aUGCaCCUUguagccUGCggUGCAGUGcCCGCCg -3' miRNA: 3'- gACGcGGAA------ACGa-ACGUUAU-GGCGGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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