miRNA display CGI


Results 1 - 20 of 502 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6744 5' -55.3 NC_001875.2 + 1 0.66 0.87823
Target:  5'- cGUGGGCG-CGGCGACaGgGGGGUGCa- -3'
miRNA:   3'- -UAUCCGCgGUUGCUG-CgUUUCGCGcg -5'
6744 5' -55.3 NC_001875.2 + 166 0.67 0.855303
Target:  5'- --cGGCGCCAaacACGugGCucuGCaaGCu -3'
miRNA:   3'- uauCCGCGGU---UGCugCGuuuCGcgCG- -5'
6744 5' -55.3 NC_001875.2 + 359 0.71 0.602097
Target:  5'- uGUAGGCuagcacGCCGACGGCGUAccagucgaauGAcCGCGCg -3'
miRNA:   3'- -UAUCCG------CGGUUGCUGCGU----------UUcGCGCG- -5'
6744 5' -55.3 NC_001875.2 + 770 0.7 0.675337
Target:  5'- -gGGGCaGCUGACGGCG----GCGCGCg -3'
miRNA:   3'- uaUCCG-CGGUUGCUGCguuuCGCGCG- -5'
6744 5' -55.3 NC_001875.2 + 1044 0.71 0.612556
Target:  5'- -gAGGCGCaCAGCGuuggGCGCAAcguuGGCgaccGCGCg -3'
miRNA:   3'- uaUCCGCG-GUUGC----UGCGUU----UCG----CGCG- -5'
6744 5' -55.3 NC_001875.2 + 1226 0.67 0.825294
Target:  5'- --cGGCGugcaggaucCCGACGcccgGCGCAAuuuaaacaguguuuuGGCGCGCa -3'
miRNA:   3'- uauCCGC---------GGUUGC----UGCGUU---------------UCGCGCG- -5'
6744 5' -55.3 NC_001875.2 + 1296 0.68 0.794757
Target:  5'- -cGGGUGCgAACGcucuCGaAAGGCGCGUg -3'
miRNA:   3'- uaUCCGCGgUUGCu---GCgUUUCGCGCG- -5'
6744 5' -55.3 NC_001875.2 + 1395 0.76 0.371915
Target:  5'- -cGGuGCGUCAGCGGCGCccuGGUGUGCu -3'
miRNA:   3'- uaUC-CGCGGUUGCUGCGuu-UCGCGCG- -5'
6744 5' -55.3 NC_001875.2 + 1458 0.68 0.794757
Target:  5'- -cGGGUGCgAACGcucuCGaAAGGCGCGUg -3'
miRNA:   3'- uaUCCGCGgUUGCu---GCgUUUCGCGCG- -5'
6744 5' -55.3 NC_001875.2 + 1530 0.69 0.722661
Target:  5'- -cGGGCGCUcucgAACGGCGCGugcuauuuuuagcGGUGCGUc -3'
miRNA:   3'- uaUCCGCGG----UUGCUGCGUu------------UCGCGCG- -5'
6744 5' -55.3 NC_001875.2 + 1887 0.69 0.752654
Target:  5'- -cAGuGCGUCAGCGGCGacccugcuuuucGGGUGCGCa -3'
miRNA:   3'- uaUC-CGCGGUUGCUGCgu----------UUCGCGCG- -5'
6744 5' -55.3 NC_001875.2 + 2273 0.67 0.863166
Target:  5'- -cGGGCcauGUUGACGuCGUGAuGCGCGCg -3'
miRNA:   3'- uaUCCG---CGGUUGCuGCGUUuCGCGCG- -5'
6744 5' -55.3 NC_001875.2 + 2540 0.7 0.685724
Target:  5'- -cGGGCcggugaaCAACGGCGCGucGgGCGCa -3'
miRNA:   3'- uaUCCGcg-----GUUGCUGCGUuuCgCGCG- -5'
6744 5' -55.3 NC_001875.2 + 2665 0.77 0.308732
Target:  5'- --cGGCGCCGGCGGCGCcuGGGGCaacugcgGCGCc -3'
miRNA:   3'- uauCCGCGGUUGCUGCG--UUUCG-------CGCG- -5'
6744 5' -55.3 NC_001875.2 + 2757 0.72 0.550303
Target:  5'- -aAGGCGCCAGCGGCuGCucc-CGgGCa -3'
miRNA:   3'- uaUCCGCGGUUGCUG-CGuuucGCgCG- -5'
6744 5' -55.3 NC_001875.2 + 3061 0.78 0.2707
Target:  5'- -gAGGCGCgCAGCGGCGCGccggggucgcccacGGCGUGCa -3'
miRNA:   3'- uaUCCGCG-GUUGCUGCGUu-------------UCGCGCG- -5'
6744 5' -55.3 NC_001875.2 + 3107 0.71 0.643991
Target:  5'- -gGGGCGCgGcucGCGGCGCAGaccugGGCG-GCg -3'
miRNA:   3'- uaUCCGCGgU---UGCUGCGUU-----UCGCgCG- -5'
6744 5' -55.3 NC_001875.2 + 3540 0.69 0.756584
Target:  5'- --uGGCGCaCGucacCGGCGCcguGGCGCGUc -3'
miRNA:   3'- uauCCGCG-GUu---GCUGCGuu-UCGCGCG- -5'
6744 5' -55.3 NC_001875.2 + 3822 0.66 0.905563
Target:  5'- --cGGcCGUCGuCGGCGCAcgccGGCGCGg -3'
miRNA:   3'- uauCC-GCGGUuGCUGCGUu---UCGCGCg -5'
6744 5' -55.3 NC_001875.2 + 4560 0.71 0.612556
Target:  5'- -gGGGcCGCCAGCaACGCGAgcAGC-CGCa -3'
miRNA:   3'- uaUCC-GCGGUUGcUGCGUU--UCGcGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.