miRNA display CGI


Results 1 - 5 of 5 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
686 3' -55.7 AC_000018.1 + 13947 0.67 0.458988
Target:  5'- cGUCUaCGggUCGGUCugCUUGUAGCc -3'
miRNA:   3'- uCGGA-GUuuGGUCAGugGGACGUCGu -5'
686 3' -55.7 AC_000018.1 + 10996 0.67 0.448624
Target:  5'- cGCCUgGGcgcACCA-UCGCCCgaGCGGCAc -3'
miRNA:   3'- uCGGAgUU---UGGUcAGUGGGa-CGUCGU- -5'
686 3' -55.7 AC_000018.1 + 11268 0.67 0.448624
Target:  5'- cGCCUgGGcgcACCA-UCGCCCgaGCGGCAc -3'
miRNA:   3'- uCGGAgUU---UGGUcAGUGGGa-CGUCGU- -5'
686 3' -55.7 AC_000018.1 + 13691 0.71 0.26512
Target:  5'- cAGCUUCGGGCaCGGUCGCg--GCAGCAc -3'
miRNA:   3'- -UCGGAGUUUG-GUCAGUGggaCGUCGU- -5'
686 3' -55.7 AC_000018.1 + 16821 1.09 0.000411
Target:  5'- cAGCCUCAAACCAGUCACCCUGCAGCAa -3'
miRNA:   3'- -UCGGAGUUUGGUCAGUGGGACGUCGU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.